BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0050.p (202 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2196 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer... 192 3e-49 RSc1201 [K] COG1309 Transcriptional regulator Rso Ralstonia sola... 161 7e-40 STM1437 [K] COG1309 Transcriptional regulator Sty Salmonella typ... 156 2e-38 ydhM [K] COG1309 Transcriptional regulator Eco Escherichia coli K12 150 2e-36 Z2666 [K] COG1309 Transcriptional regulator EcZ Escherichia coli... 150 2e-36 >PA2196 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 194 Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 100/195 (51%), Positives = 130/195 (66%), Gaps = 3/195 (1%) Query: 4 MREHYDHNKRHILQAGHALIAQKGYTGVGLAEILAAAQIPKGSFYHYFGSKEQYGRELIE 63 M+ YD ++H+L G+ ++A KG++GVGL EIL +A +PKGSFYHYF SKEQ+G+ L+E Sbjct: 1 MKTSYDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLE 60 Query: 64 HYVAGYLDRLDHVLSDRSQGGSARERLLTYWGYWLESQCCEEAEQRCLVVKLSAEVADLS 123 Y YL +D S + G +ARERL++YW WL++ C EQRCLVVKLSAEVADLS Sbjct: 61 DYFRVYLADMDQRFS--APGLNARERLMSYWQKWLDNACPPCDEQRCLVVKLSAEVADLS 118 Query: 124 DDMRQVLHGGTQRFIERIAACIEEGIAEGSLHTVLQPLATATMLYQQWLGASLLSKLGRD 183 + MR L G+ IER+ C+ +G +GSL A+ LYQ WLGASLLSKL R Sbjct: 119 ESMRITLRDGSDGIIERLVGCLGQGRDDGSLAPC-DARHMASALYQLWLGASLLSKLHRS 177 Query: 184 RAPMEAAMLVTRHVL 198 P+E AM TR +L Sbjct: 178 PGPLETAMQTTRSLL 192 >RSc1201 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum Length = 209 Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 87/194 (44%), Positives = 115/194 (59%), Gaps = 3/194 (1%) Query: 10 HNKR-HILQAGHALIAQKGYTGVGLAEILAAAQIPKGSFYHYFGSKEQYGRELIEHYVAG 68 H+ R IL AG LI +G++ VGLAEIL AQ+PKGSFY+YF SKE +G L+E Y Sbjct: 17 HDTRDRILDAGAELILGRGFSAVGLAEILGRAQVPKGSFYYYFDSKENFGVALLERYFQD 76 Query: 69 YLDRLDHVLSDRSQGGSARERLLTYWGYWLESQCCEEAEQRCLVVKLSAEVADLSDDMRQ 128 Y + + +D +ARERL+ Y+ W++ E CL VKLS EV+DLS+ MR+ Sbjct: 77 YEAGVVSLFNDTRM--TARERLIRYFAAWIDLHERSACEVTCLAVKLSGEVSDLSEPMRK 134 Query: 129 VLHGGTQRFIERIAACIEEGIAEGSLHTVLQPLATATMLYQQWLGASLLSKLGRDRAPME 188 VL G R +ERIAA +E G+A+GSL V P A LY W+G +LL+K R AP Sbjct: 135 VLSAGMTRMVERIAAAVEAGVADGSLAPVADPRGLAEGLYAMWMGGALLAKAHRSTAPFH 194 Query: 189 AAMLVTRHVLVAPQ 202 + T +L P Sbjct: 195 GCVAQTEGLLAKPN 208 >STM1437 [K] COG1309 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 199 Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 84/200 (42%), Positives = 121/200 (60%), Gaps = 3/200 (1%) Query: 4 MREHYDHNKR-HILQAGHALIAQKGYTGVGLAEILAAAQIPKGSFYHYFGSKEQYGRELI 62 M + +H+ R H+L G L Q+G+TG+GL+E+L AQ+PKGSFYHYF SKE +G ++ Sbjct: 1 MNKQTEHDTREHLLATGEQLCMQRGFTGMGLSELLKTAQVPKGSFYHYFRSKEAFGVAML 60 Query: 63 EHYVAGYLDRLDHVLSDRSQGGSARERLLTYWGYWLESQCCEEAEQRCLVVKLSAEVADL 122 E + A Y RL + S G+ R+RLL ++ L+ C + A CL VKLSAEV DL Sbjct: 61 ERHYACYHQRLTAHFT--SGPGNHRDRLLAWYQETLKQFCQQGAISGCLTVKLSAEVCDL 118 Query: 123 SDDMRQVLHGGTQRFIERIAACIEEGIAEGSLHTVLQPLATATMLYQQWLGASLLSKLGR 182 S+DMR + G Q + +A +E+G LH QPL A +LY WLGA+L +K+ R Sbjct: 119 SEDMRSTMDKGAQEIMALLARALEDGRNSHCLHFTGQPLPQAQVLYALWLGANLQAKISR 178 Query: 183 DRAPMEAAMLVTRHVLVAPQ 202 AP+E A+ + ++ P+ Sbjct: 179 SAAPLENALAHVKTIIATPE 198 >ydhM [K] COG1309 Transcriptional regulator Eco Escherichia coli K12 Length = 199 Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 80/199 (40%), Positives = 118/199 (59%), Gaps = 3/199 (1%) Query: 4 MREHYDHNKR-HILQAGHALIAQKGYTGVGLAEILAAAQIPKGSFYHYFGSKEQYGRELI 62 M +H +H+ R H+L G L Q+G+TG+GL+E+L A++PKGSFYHYF SKE +G ++ Sbjct: 1 MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAML 60 Query: 63 EHYVAGYLDRLDHVLSDRSQGGSARERLLTYWGYWLESQCCEEAEQRCLVVKLSAEVADL 122 E + A Y RL +L +S G+ R+R+L Y+ L C CL VKLSAEV DL Sbjct: 61 ERHYAAYHQRLTELL--QSGEGNYRDRILAYYQQTLNQFCQHGTISGCLTVKLSAEVCDL 118 Query: 123 SDDMRQVLHGGTQRFIERIAACIEEGIAEGSLHTVLQPLATATMLYQQWLGASLLSKLGR 182 S+DMR + G + I ++ +E G L +PL A +LY WLGA+L +K+ R Sbjct: 119 SEDMRSAMDKGARGVIALLSQALENGRENHCLTFCGEPLQQAQVLYALWLGANLQAKISR 178 Query: 183 DRAPMEAAMLVTRHVLVAP 201 P+E A+ ++++ P Sbjct: 179 SFEPLENALAHVKNIIATP 197 >Z2666 [K] COG1309 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 199 Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 80/199 (40%), Positives = 118/199 (59%), Gaps = 3/199 (1%) Query: 4 MREHYDHNKR-HILQAGHALIAQKGYTGVGLAEILAAAQIPKGSFYHYFGSKEQYGRELI 62 M +H +H+ R H+L G L Q+G+TG+GL+E+L A++PKGSFYHYF SKE +G ++ Sbjct: 1 MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAML 60 Query: 63 EHYVAGYLDRLDHVLSDRSQGGSARERLLTYWGYWLESQCCEEAEQRCLVVKLSAEVADL 122 E + A Y RL +L +S G+ R+R+L Y+ L C CL VKLSAEV DL Sbjct: 61 ERHYATYHQRLTELL--QSGEGNYRDRILAYYQQTLNQFCQHGTISGCLTVKLSAEVCDL 118 Query: 123 SDDMRQVLHGGTQRFIERIAACIEEGIAEGSLHTVLQPLATATMLYQQWLGASLLSKLGR 182 S+DMR + G + I ++ +E G L +PL A +LY WLGA+L +K+ R Sbjct: 119 SEDMRSAMDKGARGVIALLSQALENGRDSHCLTFCGEPLQQAQVLYALWLGANLQAKISR 178 Query: 183 DRAPMEAAMLVTRHVLVAP 201 + P+E A+ + ++ P Sbjct: 179 NSEPLENALAHVKTIIATP 197