BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0043.p (394 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0013 [E] COG0683 ABC-type branched-chain amino acid transport... 100 8e-21 SP0749 [E] COG0683 ABC-type branched-chain amino acid transport ... 94 7e-19 DR1038 [E] COG0683 ABC-type branched-chain amino acid transport ... 92 2e-18 DR0788 [E] COG0683 ABC-type branched-chain amino acid transport ... 90 9e-18 BMEI1930 [E] COG0683 ABC-type branched-chain amino acid transpor... 88 3e-17 >RSp0013 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 386 Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 98/333 (29%), Positives = 154/333 (46%), Gaps = 14/333 (4%) Query: 1 MIRLTRRTLIAAAAATLAAALSPLALAADPIKIGLVTALSGQSAQAGEALTRGMSIAIDE 60 M ++ +R L+ AAAA A A + A D IKIG+ ALSG +AQ G A+ G +A DE Sbjct: 1 MQKIIKRLLVTAAAAGAAMAAGTASAAQD-IKIGVAEALSGGAAQYGAAIRNGFQLAADE 59 Query: 61 INAKGGLLGGRKLELVRRDDEGNPAKGVVAARELIFKEKVTVLFGGLDTPVSMAIVPIIN 120 INA GG + G K+ LV D++G + + ++LIF++KV ++FG + + A PI Sbjct: 60 INAGGG-INGSKIALVIEDEQGKKEEAINVFKKLIFQDKVALVFGPTLSNSAQAADPIAQ 118 Query: 121 QEKVPFVGPWAAGTGVTKNGANPNYAFRVSAVDELVDKAMLNYAQKTFKSSKAGLILVNN 180 K G G+T G ++ FR S + V A + K K ++ N+ Sbjct: 119 GAKTVVFGTSNTADGITSIG---DHVFRNSVTEADVLPATIQTVVKKAGVKKVAVLYGND 175 Query: 181 P-WGESNEKGIVAALAEKGLKPAGIEKFEASDVDVVPQLSRLKAAGADTLYLVGNVGPSA 239 + +S AL + + E F DVD QL+++KA D + L + Sbjct: 176 DVFTKSGYDNFKKALEDLKIPVTATETFAKGDVDFKAQLTKIKATNPDAIVLSALIAEGG 235 Query: 240 QVVKSLDRMGWKVPVVSHWGPAGGRFTELAGPNAKNVHFIQTFSFFGKLSPVGEKVVAEL 299 ++ ++G VP++ G + +LA + N+ +S +P K + Sbjct: 236 PIMVQARQLGLNVPIIGGNGMNSVKVFDLARDKSDNLWVGSPWSIENH-TPENSKFITAY 294 Query: 300 KAKYPAIKGPDDITPAVGVANAYDGMQLAALAI 332 A+Y A PD A AYD M +AA A+ Sbjct: 295 TARYKA--APDQF-----AAQAYDAMHIAAQAL 320 >SP0749 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Spn Streptococcus pneumoniae TIGR4 Length = 386 Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 93/329 (28%), Positives = 146/329 (44%), Gaps = 20/329 (6%) Query: 31 IKIGLVTALSGQSAQAGEALTRGMSIAIDEINAKGGLLGGRKLELVRRDDEGNPAKGVVA 90 IKIG SG A G A +G +A+DEINA GG+ G+++E+V +D++ A+ Sbjct: 41 IKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGI-DGKQIEVVDKDNKSETAEAASV 99 Query: 91 ARELIFKEKVTVLFGGLDTPVSMAIVPIINQEKVPFVGPWAAGTGVTKNGANPNYAFRVS 150 L+ + KV+ + G + + A V + VP + P A G+TK +Y F + Sbjct: 100 TTNLVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTK---GQDYLFIGT 156 Query: 151 AVDELVDKAMLNYAQKTFKSSKAGLILVNNPWGESNEKGIVAALAE--KGLKPAGIEKFE 208 D K + NY + + K L N KGI + E KG A E F Sbjct: 157 FQDSFQGKIISNYVSEKLNAKKVVLYTDN---ASDYAKGIAKSFRESYKGEIVAD-ETFV 212 Query: 209 ASDVDVVPQLSRLKAAGADTLYLVGNVGPSAQVVKSLDRMGWKVPVVSHWGPAGGRFTEL 268 A D D L+++K D + + G + ++V MG P+V G G F + Sbjct: 213 AGDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKPIVGGDGFNGEEFVQQ 272 Query: 269 A-GPNAKNVHFIQTFSFFGKLSPVGEKVVAELKAKYPAIKGPDDITPAVGVANAYDGMQL 327 A A N++FI FS ++S + + +AKY + P+ A AYD + L Sbjct: 273 ATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKY-------NEEPSTFAALAYDSVHL 325 Query: 328 AALAIAKAGSTNGDAVREGFYKIDRYEGL 356 +A A G+ N ++ K +EG+ Sbjct: 326 --VANAAKGAKNSGEIKNNLAKTKDFEGV 352 >DR1038 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Dra Deinococcus radiodurans Length = 393 Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 124/258 (48%), Gaps = 22/258 (8%) Query: 31 IKIGLVTALSGQSAQAGEALTRGMSIAIDEINAKGGLLGGRKLELVRRDDEGNPAKGVVA 90 +KI ++ LSG S+ G + G +A++E A+ LG L LV DD+ +PA G A Sbjct: 34 VKIATISPLSGSSSNLGLQIKNGAQLAVNEYKAEFAKLG-MNLSLVAYDDQADPATGTAA 92 Query: 91 ARELIFKEKVTVLFGGLDTPVSMAIVPIINQEKVPFVGPWAAGTGVTKNG-ANPNYAFRV 149 AR ++ + V + G L+T V++ ++ KV V P GT VT G N N R+ Sbjct: 93 ARRVVADKNVLAVVGTLNTGVAIPASQALSTSKVAMVSPANTGTKVTDRGLKNMN---RI 149 Query: 150 SAVDELVDKAMLNYAQKTFKSSKAGLILVNNPWGESNEKGIVAALAEKGLKPAGI----- 204 A D+ A ++ T K K +I P+GE ++ AEK LK G+ Sbjct: 150 CARDDAQGPAGADFMVSTLKVKKVYVINDKTPYGEG-----LSGEAEKRLKAKGVQIVQS 204 Query: 205 EKFEASDVDVVPQLSRLKAAGADTLY---LVGNVGPSAQVVKSLDRMGWKVPVVSHWGPA 261 E A + D +++++ D +Y L G +GP AQ +++ G +VP++ G Sbjct: 205 EGVAAEERDFTAIITKIQTLKPDAIYFGGLYGQIGPFAQQLRA---KGVQVPLIGGDGMD 261 Query: 262 GGRFTELAGPN-AKNVHF 278 +LAG A N++F Sbjct: 262 SDELAKLAGAQGANNIYF 279 >DR0788 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Dra Deinococcus radiodurans Length = 384 Score = 90.1 bits (222), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 91/334 (27%), Positives = 146/334 (43%), Gaps = 31/334 (9%) Query: 31 IKIGLVTALSGQSAQAGEALTRGMSIAIDEINAKGGLLGGRKLELVRRDDEGNPAKGVVA 90 +KI ++ LSG + G + G +AI+E+ + LG L LV DD+ +PA G A Sbjct: 26 VKIATISPLSGAVSNLGVQMKNGTQLAINEMKPEFAKLG-MNLSLVAYDDQADPATGTSA 84 Query: 91 ARELIFKEKVTVLFGGLDTPVSMAIVPIINQEKVPFVGPWAAGTGVTKNG-ANPNYAFRV 149 AR ++ + V L G L + V++ +++ + V P A VT G N N RV Sbjct: 85 ARRVVADKTVLGLVGPLTSGVAIPATQVMSTSHLVAVAPVATSEKVTDRGLKNVN---RV 141 Query: 150 SAVDELVDKAMLNYAQKTFKSSKAGLILVNNPWGESNEKGIVAALAEKGLKPAGIEKFEA 209 A D+ A N+ T K+ ++ P+G+ A+ KGL+ E A Sbjct: 142 CARDDAQGSAGGNFVAGTLKAKSVYVLNDKTPYGQGMAAEAEKAMKAKGLRVVQSEGVPA 201 Query: 210 SDVDVVPQLSRLKAAGADTLY---LVGNVGPSAQVVKSLDRMGWKVPVVSHWGPAGGRFT 266 D D +++++ D +Y L G +GP Q +++ G + P+VS G + Sbjct: 202 EDRDFTAVITKIQTLKPDAIYFAGLYGQIGPFTQQLRA---KGVQTPIVSGDGLDSPDYV 258 Query: 267 ELAGPNAKNVHFIQTFSFFGKLSPVGEKVVAELKAKYPAIKGPDDITPAVGVA-NAYDGM 325 +LAG + NV+F + P +KV + + + A P G A AYD Sbjct: 259 KLAGKDVSNVYFTSLAPSLA-VVPAAKKVADQYQKTFGA--------PMQGTAIMAYDST 309 Query: 326 QLAALAIAKAGSTNGD----------AVREGFYK 349 ++ I A NG+ AVR G +K Sbjct: 310 KVLLTGILNAAKANGNKVPTREQVETAVRGGTFK 343 >BMEI1930 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 368 Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 83/326 (25%), Positives = 144/326 (44%), Gaps = 14/326 (4%) Query: 17 LAAALSPLALAADPIKIGLVTALSGQSAQAGEALTRGMSIAIDEINAKGGLLGGRKLELV 76 AA + + A I IG++ L+G A G+ + +G A++ IN GG+ G K+ L Sbjct: 11 FAATIGFASAAYADITIGVIAPLTGPVAAFGDQVKKGAETAVEVINKAGGIKG-EKVVLK 69 Query: 77 RRDDEGNPAKGVVAARELIFKEKVTVLFGGLDTPVSMAIVPIINQEKVPFVGPWAAGTGV 136 DD G P +GV AA +++ + + + G + T V++ + ++++ V V P A G + Sbjct: 70 FADDAGEPKQGVSAANQIV-GDGIKFVVGLVTTGVAVPVSDVLSENGVLMVTPTATGPDL 128 Query: 137 TKNGANPNYAFRVSAVDELVDKAMLNYAQKTFKSSKAGLILVNNPWGESNEKGIVAALAE 196 T G FR D + M +Y K K K +I +G+ AA+ + Sbjct: 129 TARGLEN--VFRTCGRDGQQAEVMADYVLKNMKDKKVAVIHDKGAYGKGLADAFKAAINK 186 Query: 197 KGLKPAGIEKFEASDVDVVPQLSRLKAAGADTLYLVGNVGPSAQVVKSLDRMGWKVPVVS 256 G+ + D D +++LK+AGA+ +Y G + + L G + V+ Sbjct: 187 GGITEVHYDSVTPGDKDFSALVTKLKSAGAEVVYFGGYHAEGGLLSRQLHDAGMQALVLG 246 Query: 257 HWGPAGGRFTELAGPNAKNVHFIQTFSFFGKLSPVGEKVVAELKAKYPAIKGPDDITPAV 316 G + + + G NA+ F T + +P + + LKAK +I Sbjct: 247 GEGLSNTEYWAIGGTNAQGTLF--TNAKDATKNPAAKDAIQALKAK--------NIPAEA 296 Query: 317 GVANAYDGMQLAALAIAKAGSTNGDA 342 NAY +++ I +AGST+ A Sbjct: 297 FTMNAYAAVEVIKAGIERAGSTDDSA 322