BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0028.p (236 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3087 [TK] COG0745 Response regulators consisting of a CheY-li... 267 1e-71 ZkdpE [TK] COG0745 Response regulators consisting of a CheY-like... 258 6e-69 ECs0722 [TK] COG0745 Response regulators consisting of a CheY-li... 258 6e-69 kdpE [TK] COG0745 Response regulators consisting of a CheY-like ... 256 3e-68 YPO2688 [TK] COG0745 Response regulators consisting of a CheY-li... 256 4e-68 >RSc3087 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 234 Score = 267 bits (683), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 134/225 (59%), Positives = 167/225 (74%), Gaps = 2/225 (0%) Query: 7 NIVFIEDDPHIRKLVRSALEQEGFIVHEAKSAREGVTEAGTRKPDLIILDLGLPDGDGKQ 66 ++ I+D+PHIR+ VR+ALE EG V EA G+ EAGTR+PD +ILDLGLPDGDG Sbjct: 11 TVLVIDDEPHIRRFVRAALEAEGCEVFEADRVARGLIEAGTRQPDAVILDLGLPDGDGMS 70 Query: 67 VISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHARA 126 +I ++R W+ VP+++LSAR E +K++ALDAGADDYL KPFG+ EL+AR+R LRRHA+ Sbjct: 71 LIRDLRTWTEVPVLVLSARVDERDKIDALDAGADDYLTKPFGVGELIARLRVLLRRHAKR 130 Query: 127 SGAGQSSGRYRLGDVVVDLPARSVSRNGEALHLTQIEYRLLATLLRDAGRVITHRQLLVA 186 G S + GDV VDL R VSRNGE +HLT IEYRLLA LL G V+THR+LL Sbjct: 131 GEDGGSIIAF--GDVQVDLARRLVSRNGEPVHLTPIEYRLLAVLLGRRGTVMTHRELLRE 188 Query: 187 GWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVA 231 WGP+H++ HYLRIYM LR KLERD A+P H+LTE+GVGYR A Sbjct: 189 VWGPAHSDSSHYLRIYMGHLRHKLERDPARPQHLLTEVGVGYRFA 233 >ZkdpE [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain EcZ Escherichia coli O157:H7 EDL933 Length = 225 Score = 258 bits (660), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 126/224 (56%), Positives = 164/224 (73%), Gaps = 3/224 (1%) Query: 7 NIVFIEDDPHIRKLVRSALEQEGFIVHEAKSAREGVTEAGTRKPDLIILDLGLPDGDGKQ 66 N++ +ED+ IR+ +R+ALE +G V+EA++ + G+ EA TRKPDLIILDLGLPDGDG + Sbjct: 3 NVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 Query: 67 VISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHARA 126 I ++R WS+VP+++LSAR++ES+K+ ALDAGADDYL KPFG+ EL AR+R LRRH Sbjct: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH--- 119 Query: 127 SGAGQSSGRYRLGDVVVDLPARSVSRNGEALHLTQIEYRLLATLLRDAGRVITHRQLLVA 186 S + DV VDL AR + R E +HLT IE+RLLA LL +AG+V+T RQLL Sbjct: 120 SATAAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 Query: 187 GWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRV 230 WGP+ E HYLRIYM LRQKLE+D A+P H +TE G+GYR Sbjct: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPSHFITETGIGYRF 223 >ECs0722 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ecs Escherichia coli O157:H7 Length = 225 Score = 258 bits (660), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 126/224 (56%), Positives = 164/224 (73%), Gaps = 3/224 (1%) Query: 7 NIVFIEDDPHIRKLVRSALEQEGFIVHEAKSAREGVTEAGTRKPDLIILDLGLPDGDGKQ 66 N++ +ED+ IR+ +R+ALE +G V+EA++ + G+ EA TRKPDLIILDLGLPDGDG + Sbjct: 3 NVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 Query: 67 VISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHARA 126 I ++R WS+VP+++LSAR++ES+K+ ALDAGADDYL KPFG+ EL AR+R LRRH Sbjct: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH--- 119 Query: 127 SGAGQSSGRYRLGDVVVDLPARSVSRNGEALHLTQIEYRLLATLLRDAGRVITHRQLLVA 186 S + DV VDL AR + R E +HLT IE+RLLA LL +AG+V+T RQLL Sbjct: 120 SATAAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 Query: 187 GWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRV 230 WGP+ E HYLRIYM LRQKLE+D A+P H +TE G+GYR Sbjct: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPSHFITETGIGYRF 223 >kdpE [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 225 Score = 256 bits (654), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 126/224 (56%), Positives = 163/224 (72%), Gaps = 3/224 (1%) Query: 7 NIVFIEDDPHIRKLVRSALEQEGFIVHEAKSAREGVTEAGTRKPDLIILDLGLPDGDGKQ 66 N++ +ED+ IR+ +R+ALE +G V EA++ + G+ EA TRKPDLIILDLGLPDGDG + Sbjct: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 Query: 67 VISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHARA 126 I ++R WS+VP+++LSAR++ES+K+ ALDAGADDYL KPFG+ EL AR+R LRRH Sbjct: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH--- 119 Query: 127 SGAGQSSGRYRLGDVVVDLPARSVSRNGEALHLTQIEYRLLATLLRDAGRVITHRQLLVA 186 S + DV VDL AR + R E +HLT IE+RLLA LL +AG+V+T RQLL Sbjct: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 Query: 187 GWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRV 230 WGP+ E HYLRIYM LRQKLE+D A+P H +TE G+GYR Sbjct: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 >YPO2688 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ype Yersinia pestis Length = 209 Score = 256 bits (653), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 129/210 (61%), Positives = 154/210 (73%), Gaps = 3/210 (1%) Query: 21 VRSALEQEGFIVHEAKSAREGVTEAGTRKPDLIILDLGLPDGDGKQVISEIRNWSSVPIV 80 +R ALE EG+ V E+++ + G+ EAGTRKPDLIILDLGLPDGDG I ++R WS++PI+ Sbjct: 1 MRIALESEGWRVFESETLQRGLIEAGTRKPDLIILDLGLPDGDGLNYIQDLRQWSAIPII 60 Query: 81 ILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHARASGAGQSSGRYRLGD 140 +LSAR E +KV ALDAGADDYL KPFG+ ELLAR+R LRRH SGA Q S D Sbjct: 61 VLSARNNEEDKVAALDAGADDYLSKPFGISELLARVRVALRRH---SGASQESPLVNFAD 117 Query: 141 VVVDLPARSVSRNGEALHLTQIEYRLLATLLRDAGRVITHRQLLVAGWGPSHAEDGHYLR 200 + VDL R V+R GE LHLT IE+RLL LL +AG+VIT RQLL WGP++ E HYLR Sbjct: 118 ISVDLINRQVTRAGENLHLTPIEFRLLTALLANAGKVITQRQLLNQVWGPNYVEHSHYLR 177 Query: 201 IYMQRLRQKLERDAAQPVHILTEIGVGYRV 230 IYM LRQKLE D +P H+LTE GVGYR Sbjct: 178 IYMGHLRQKLEADPTRPKHLLTETGVGYRF 207