BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0024.p (608 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1944_1 [S] COG3501 Uncharacterized protein conserved in bacte... 357 6e-98 RSc0958_1 [S] COG3501 Uncharacterized protein conserved in bacte... 356 7e-98 RSp0103_1 [S] COG3501 Uncharacterized protein conserved in bacte... 348 2e-95 STM0289 [S] COG3501 Uncharacterized protein conserved in bacteri... 249 1e-65 PA0095 [S] COG3501 Uncharacterized protein conserved in bacteria... 245 3e-64 >RSc1944_1 [S] COG3501 Uncharacterized protein conserved in bacteria Rso Ralstonia solanacearum Length = 549 Score = 357 bits (915), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 211/504 (41%), Positives = 285/504 (56%), Gaps = 38/504 (7%) Query: 31 FMRLRFPHGDGPDAP----------LLLQRLDAEESLSRDFSFVVELLTDDAHLPLKSMM 80 + L FP D P A ++++RL+A+E L +DF F + LL D A L L M+ Sbjct: 1 MLGLSFPKDDAPTATDPRGRSFPVQMVVERLEAQEGLGQDFRFELTLLADHAGLVLADML 60 Query: 81 GKLLVIELVREDGHLRYFSGYVFAFSRQRADGAVVVYEAQLGPWFRLLSWRRDHHLFHDK 140 GKLL + LV+ DG LR+F+G+V FS +D V Y A L PW R ++ +F D+ Sbjct: 61 GKLLAVSLVKPDGTLRWFTGHVAEFSLVGSDPGVATYRAVLRPWLWFARQRVNNRVFRDR 120 Query: 141 TLHQQTADIFADYPLHARWQWQVSSGDATMTDAFQ---YGESDHNYLSRRWEAAGWHYWY 197 TL+QQ ADI + A WQW VS D T A Q GES+HNY+ RR EA GW Y+Y Sbjct: 121 TLYQQIADILQGHGDWALWQWDVSGDDVPFTMAVQGGGEGESEHNYIHRRLEARGWTYYY 180 Query: 198 EHDASGHTLIVGSDSCQQAAIDGEQ-SVRFHANGGSAEDDAIDRWSPQREMAASSVVLGS 256 +HDA+GH L++ + Q +DG + F A GG E++AI RW+P + A+ + Sbjct: 181 KHDATGHQLVIIDSNSQCPPVDGNDPRIPFQAEGGPQEENAIQRWTPVQTAVAALFAASA 240 Query: 257 FDFKSPTPRWMEVPTLNRQGVAPSIEHYLYTGHHGYRDRD-DGDAQSRLRIEEIEARARQ 315 FDFK P R T +QG P +E + Y GH+G+R D G A LR EEIEA A+Q Sbjct: 241 FDFKRPQARHHTESTQRKQGRVPELETHEYVGHYGFRKEDPTGAALLNLRREEIEAHAQQ 300 Query: 316 VEGQGNCRAMMPGRWFRLVGHVECPRFGGPSSQGRDEFLILSVRHRIHNNY--------- 366 + +GN +++ G WF L GH F + ++LI++ H NNY Sbjct: 301 YQAEGNNSSVVCGGWFYLFGH-----FSNTEREEDSQYLIVAASHSASNNYPAELGRQGG 355 Query: 367 ---FPLAAQDAEPPYRNEFRCMRRQIPWRPGPGYNSHVPIARGAQTATVVGVPGQPALWT 423 PL + E YRN F ++R +PWRPG G NS G QTA VVG G A+ Sbjct: 356 HTAEPLPGRKGE--YRNRFTAIKRAVPWRPGRGRNSVEVKVDGHQTARVVGRDGLGAVDV 413 Query: 424 DEYARVRVQFHWDREGRHDIGSSAWIRVASPWAGAQLGALALPRVGAEVLVQWLDGNPDR 483 DE+ R+ +QFHWDREG+H SA +RVAS WAG + G ++ PRVG+EVLV LDGNPD Sbjct: 414 DEHGRILIQFHWDREGKH----SARVRVASNWAGGETGMVSWPRVGSEVLVVALDGNPDH 469 Query: 484 PVIVGSLYNADHLPPWALPAQRAL 507 +++G ++NA +PPW LP Q L Sbjct: 470 FLVIGVVHNAQRMPPWQLPTQGVL 493 >RSc0958_1 [S] COG3501 Uncharacterized protein conserved in bacteria Rso Ralstonia solanacearum Length = 591 Score = 356 bits (914), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 210/507 (41%), Positives = 285/507 (56%), Gaps = 37/507 (7%) Query: 27 QHRRFMRLRFPHGDGPDAP----------LLLQRLDAEESLSRDFSFVVELLTDDAHLPL 76 Q R + L FP D P A ++++RL+A+E L DF F + LL D A L L Sbjct: 40 QSNRLLGLSFPKDDTPTATDPRGRSFPVQMVVERLEAQEGLGEDFRFELTLLADHAGLVL 99 Query: 77 KSMMGKLLVIELVREDGHLRYFSGYVFAFSRQRADGAVVVYEAQLGPWFRLLSWRRDHHL 136 M+GKLL + LV+ DG LR+F+G+V FS +D V Y A L PW R ++ + Sbjct: 100 ADMLGKLLAVSLVKPDGTLRWFTGHVSEFSLVGSDPGVATYRAVLRPWLWFALHRINNRV 159 Query: 137 FHDKTLHQQTADIFADYPLHARWQWQVSSGDATMTDAFQ---YGESDHNYLSRRWEAAGW 193 F D++L++Q A+I DY A+W+W S DA T A Q GESDHNY+ RR EA GW Sbjct: 160 FRDRSLYEQIAEILQDYGAWAQWRWDASGADAPFTMAVQGGGQGESDHNYIHRRLEAQGW 219 Query: 194 HYWYEHDASGHTLIVGSDSCQQAAIDGEQSVRFHANGGSAEDDAIDRWSPQREMAASSVV 253 Y YEHDA+GH L++ + Q + G+ + F A GG E++AI RW+P + AA+ Sbjct: 220 TYRYEHDATGHRLVIFDSNSQCPRVAGDHRIPFQAAGGPQEENAIQRWTPVQTAAAALFA 279 Query: 254 LGSFDFKSPTPRWMEVPTLNRQGVAPSIEHYLYTGHHGYRDRD-DGDAQSRLRIEEIEAR 312 +FDFK R TL +QG P +E + Y GH+G+ D G A LR EE+EA Sbjct: 280 ASAFDFKQSQARHQAESTLRKQGRVPELEAHEYVGHYGFTKEDPTGAALLNLRREEVEAH 339 Query: 313 ARQVEGQGNCRAMMPGRWFRLVGHVECPRFGGPSSQGRDEFLILSVRHRIHNNYF----- 367 A Q + +GN ++ G WF L H F + ++LI++ H NNY Sbjct: 340 AEQYQAEGNNSSVAAGCWFELSEH-----FSNTEREEDSQYLIVAASHSASNNYLAELGR 394 Query: 368 -------PLAAQDAEPPYRNEFRCMRRQIPWRPGPGYNSHVPIARGAQTATVVGVPGQPA 420 PLA + E YRN F ++R +PWRPG G NS G QTATV+ G A Sbjct: 395 QGGREAQPLAGRKGE--YRNRFTAIKRAVPWRPGRGRNSVDVRVYGQQTATVLAAGGLGA 452 Query: 421 LWTDEYARVRVQFHWDREGRHDIGSSAWIRVASPWAGAQLGALALPRVGAEVLVQWLDGN 480 L DE+ R+ ++FHWDREG+ SA +RVAS WAG + G ++ PR G+EVLV LDGN Sbjct: 453 LDVDEHGRILIRFHWDREGKF----SARVRVASNWAGGETGMVSWPRAGSEVLVVALDGN 508 Query: 481 PDRPVIVGSLYNADHLPPWALPAQRAL 507 PD +++G ++NA +PPW LPAQ AL Sbjct: 509 PDHFLVIGVVHNARRMPPWQLPAQGAL 535 >RSp0103_1 [S] COG3501 Uncharacterized protein conserved in bacteria Rso Ralstonia solanacearum Length = 569 Score = 348 bits (894), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 210/505 (41%), Positives = 283/505 (56%), Gaps = 33/505 (6%) Query: 27 QHRRFMRLRFPHGDGPDAP----------LLLQRLDAEESLSRDFSFVVELLTDDAHLPL 76 Q R + L FP D P A ++++RL+A+E L +DF F + LL D A L L Sbjct: 18 QSNRLLGLSFPKDDAPTATDLRGRSVPVQMVVERLEAQEGLGQDFRFELTLLADSAGLVL 77 Query: 77 KSMMGKLLVIELVREDGHLRYFSGYVFAFSRQRADGAVVVYEAQLGPWFRLLSWRRDHHL 136 M+GKLL + LV+ DG LR+F+G+V FS +D V Y A L PW R + + Sbjct: 78 ADMLGKLLAVSLVKPDGTLRWFTGHVAEFSLVGSDPGVATYRAVLRPWLWFARARINDRV 137 Query: 137 FHDKTLHQQTADIFADYPLHARWQWQVSSGDATMTDAFQ---YGESDHNYLSRRWEAAGW 193 F D++L+QQ ++I DY A+W+W V+ DA T A Q GESDHNY+ RR EA G Sbjct: 138 FRDRSLYQQISEILQDYGAWAQWRWAVAGEDAPFTMAVQGGGQGESDHNYIYRRLEARGC 197 Query: 194 HYWYEHDASGHTLIVGSDSCQQAAIDGEQSVRFHANGGSAEDDAIDRWSPQREMAASSVV 253 YEHDA+GH L++ S Q ++G+Q + F A GG E++AI RW+P + AA+ Sbjct: 198 ISGYEHDATGHRLVIFDRSSQCPPVEGDQRIPFQAAGGPQEENAIQRWTPVQTAAAALFA 257 Query: 254 LGSFDFKSPTPRWMEVPTLNRQGVAPSIEHYLYTGHHGYRDRD-DGDAQSRLRIEEIEAR 312 +FDFK P R T +QG P +E + Y GH+G+ D G LR EEIEA Sbjct: 258 ASAFDFKHPQARHQAESTQRKQGSVPELEAHEYAGHYGFPKEDPRGIGLLNLRREEIEAH 317 Query: 313 ARQVEGQGNCRAMMPGRWFRLVGHVECPRFGGPSSQGRDEFLILSVRHRIHNNYFPLAAQ 372 A Q + +GN ++ G WF L GH F +++LI+ H NNY + Sbjct: 318 AEQYQAEGNNASVASGLWFELSGH-----FSNTERAEDNQYLIVEASHSASNNYLAELGR 372 Query: 373 DA--EPP--------YRNEFRCMRRQIPWRPGPGYNSHVPIARGAQTATVVGVPGQPALW 422 E P YRN F ++R +PWRPG G NS Q+ATVV G AL Sbjct: 373 QGGHEAPLFAGRKGEYRNRFIAIKRAVPWRPGRGRNSIDVKVERHQSATVVAAGGLGALD 432 Query: 423 TDEYARVRVQFHWDREGRHDIGSSAWIRVASPWAGAQLGALALPRVGAEVLVQWLDGNPD 482 DE+ RV ++FHWDREG++ SA +RVAS WAG + G ++ PR G+EVLV LDGNPD Sbjct: 433 VDEHGRVLIRFHWDREGKY----SARVRVASNWAGGETGMVSWPRAGSEVLVIALDGNPD 488 Query: 483 RPVIVGSLYNADHLPPWALPAQRAL 507 +I+G ++NA +PPW LPAQ AL Sbjct: 489 HFLIIGGVHNAHRMPPWQLPAQGAL 513 >STM0289 [S] COG3501 Uncharacterized protein conserved in bacteria Sty Salmonella typhimurium LT2 Length = 729 Score = 249 bits (636), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 158/481 (32%), Positives = 234/481 (48%), Gaps = 44/481 (9%) Query: 42 PDAPLLLQRLDAEESLSRDFSFVVELLTDD----------AHLPLKSMMGKLLVIELVRE 91 P LL LD E+LS FS+VV+L T D A+LPLK M+GK L + + + Sbjct: 108 PPGALLFASLDGGETLSELFSYVVQLKTPDTLNLGYVSPAANLPLKPMVGKDLCVNIELD 167 Query: 92 DGHLRYFSGYVFAFSRQRADGAVVVYEAQLGPWFRLLSWRRDHHLFHDKTLHQQTADIFA 151 G R+ SG V A +G V YE ++ PW +LL+ D+ F +KT+ ++ A Sbjct: 168 GGGKRHISGLVTAARVVGHEGRSVTYELRMEPWVKLLTHTSDYKAFQNKTVVDILDEVLA 227 Query: 152 DYP--LHARW-------QWQVSSGDATMTDAFQYGESDHNYLSRRWEAAGWHYWYEHDAS 202 +YP + R WQV QYGE+D ++L R + G ++W+EH Sbjct: 228 EYPYPVEKRLVESYPVRTWQV-----------QYGETDFDFLQRLMQEWGIYWWFEHSED 276 Query: 203 GHTLIVGSDSCQQAAIDGEQSVRFHANGGSAEDDAIDRWSPQREMAASSVVLGSFDFKSP 262 HTL++ A V +H G + + I + + VL FDF P Sbjct: 277 SHTLVLADAISAHKACPDSPLVEWHQEGLKLDKEFIHTITANESLRTGQWVLDDFDFTKP 336 Query: 263 TPRWMEVPTLNRQGVAPSIEHYLYTGHHGYRDRDDGDAQSRLRIEEIEARARQVEGQGNC 322 R+ + EHY + G Y D+ +G+ +R+R+E + +V G GN Sbjct: 337 RSLLANTVANPRETGHATYEHYEWPGD--YFDKSEGEMLTRIRMEAQRSPGSRVLGGGNI 394 Query: 323 RAMMPGRWFRLVGHVECPRFGGPSSQGRDEFLILSVRHRIHNNYFPLAAQDAEPPYRNEF 382 R +M G F L + P+++ E+L++ + +N + QD + F Sbjct: 395 RTLMTGYTFTLENY--------PTAEVNQEYLLMQTLLFVQDNA-QHSGQDQHFTFSTRF 445 Query: 383 RCMRRQIPWRPGPGYNSHVPIARGAQTATVVGVPGQPALWTDEYARVRVQFHWDREGRHD 442 + +RP + P +G Q+A V G GQ +WTD+Y RV+VQF WDR G+ D Sbjct: 446 ELHPTREVFRPQRTVSK--PHTKGPQSAIVTGPAGQ-EIWTDQYGRVKVQFGWDRYGKMD 502 Query: 443 IGSSAWIRVASPWAGAQLGALALPRVGAEVLVQWLDGNPDRPVIVGSLYNADHLPPWALP 502 SS WIRV+ PWAG G + +PR+G EVLV + +G+PD P+IVG YN D +PPW LP Sbjct: 503 ENSSCWIRVSYPWAGKGFGMIQIPRIGQEVLVDFKNGDPDLPIIVGRTYNQDTMPPWGLP 562 Query: 503 A 503 Sbjct: 563 G 563 >PA0095 [S] COG3501 Uncharacterized protein conserved in bacteria Pae Pseudomonas aeruginosa Length = 741 Score = 245 bits (625), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 152/483 (31%), Positives = 239/483 (49%), Gaps = 18/483 (3%) Query: 23 VAEPQHRRFMRLRFPHGDGPDAPLLLQRLDAEESLSRDFSFVVELLTDDAHLPLKSMMGK 82 +A Q R +R+ P G L LQR++ E L R F++ +EL++++ LPL ++GK Sbjct: 1 MALAQQTRLVRVDSPLGA---EVLQLQRMEGREELGRPFAYELELISENPDLPLDGLLGK 57 Query: 83 LLVIELVREDGHLRYFSGYVFAFSRQRADGAVVVYEAQLGPWFRLLSWRRDHHLFHDKTL 142 + L DG R+F G V A S+ +G Y+ L PW LL+ D +F ++ + Sbjct: 58 PASLALELHDGSRRHFHGIVAACSQGSGNGQFASYQVTLRPWLWLLTRTSDCRIFQNQKV 117 Query: 143 HQQTADIFADYPLHARWQWQVSSGDATMTDAFQYGESDHNYLSRRWEAAGWHYWYEHDAS 202 +F D + ++ +S QY E+ +++SR E G +YW+ H+ S Sbjct: 118 PDIIKQVFRDLGF-SDFEDALSRSYREWEYCVQYRETSFDFVSRLMEQEGIYYWFRHEQS 176 Query: 203 GHTLIVGSDSCQQAAIDGEQSVRFHA-NGGSAEDDAIDRWSPQREMAASSVVLGSFDFKS 261 H L++ + SV ++ E D W RE+ + S+ L +DF+ Sbjct: 177 RHILVLSDAYGAHQSPPNYASVPYYPPTLEQRERDHFYDWHMAREVQSGSLSLNDYDFQR 236 Query: 262 PTPRWMEVPTLNRQGVAPSIEHYLYTGHHGYRDRDDGDAQSRLRIEEIEARARQVEGQGN 321 P R + R A Y Y G Y DG+ +R RIE ++AR +V +G Sbjct: 237 PGARLEVRSNIARSHAAADYPLYDYPGE--YVQSQDGEQYARTRIEALQARYERVRLRGR 294 Query: 322 CRAMMPGRWFRLVGHVECPRFGGPSSQGRDEFLILSVRHRIHNNYFPLAAQDAEPPYRNE 381 R + G F+L G+ P E+L++ +R+ + + +E Sbjct: 295 ARGLGSGHLFKLSGY--------PREDQNREYLVVGAEYRVVQELYETGGGGVGAQFESE 346 Query: 382 FRCMRRQIPWRPGPGYNSHVPIARGAQTATVVGVPGQPALWTDEYARVRVQFHWDREGRH 441 C+ +RP P + +PI RG QTA VVG G+ +WTD+Y RV+V FHWDR + Sbjct: 347 LDCIDAGQAYRPLP--TTPLPIVRGPQTAVVVGPKGEE-IWTDQYGRVKVHFHWDRHDQS 403 Query: 442 DIGSSAWIRVASPWAGAQLGALALPRVGAEVLVQWLDGNPDRPVIVGSLYNADHLPPWAL 501 + SS WIRV+ WAG G++ +PR+G EV+V +L+G+PDRP+I G +YNA+ P+ L Sbjct: 404 NENSSCWIRVSQAWAGKNWGSMQIPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYEL 463 Query: 502 PAQ 504 PA Sbjct: 464 PAN 466