BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0013.p (305 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3565 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 335 7e-92 VCA0635 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae 267 3e-71 RSc3280 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 190 3e-48 VCA0991 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae 173 4e-43 RSp0997 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 168 1e-41 >PA3565 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 306 Score = 335 bits (860), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 165/293 (56%), Positives = 215/293 (73%) Query: 5 MIRLEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 64 M+R +DL +FV +D+GSLSAAARQ +++PAVASAA+KRLE EL RL ARSTRSLRLTP Sbjct: 1 MLRYDDLQVFVHTSDSGSLSAAARQLEISPAVASAALKRLESELEVRLFARSTRSLRLTP 60 Query: 65 DGERYLQYARNVLAEVNAGRDAVAHGRRVVGGNLSLSVPSDLGRNLMCQWLDEFLAQHPA 124 +G+ +L +AR L + GR + G+ + G L LS PSD GRNL+ WLDEF A++P Sbjct: 61 EGDAFLLHARASLRSLEEGRRLLQGGKDQIAGVLQLSAPSDFGRNLLLPWLDEFQARYPQ 120 Query: 125 VSLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALPLAPDNRRVLCASPDYLARHGRPR 184 +SL++ + DRV D++RQPV+VAIRY P DSSLVALPLAPDNRRVLCA+P YLA G PR Sbjct: 121 LSLRLLLGDRVTDLYRQPVDVAIRYGAPADSSLVALPLAPDNRRVLCAAPGYLAERGEPR 180 Query: 185 TPADLRQHNCLRYLLSDMLHSQWTFFKDGTPVQVQVSGDRVCDDGELVHRWAVEGRGIAY 244 P DLR+HNCL Y L +H +W F + + + V+GDRVCDD ++V RWA+ G+G+ Y Sbjct: 181 QPDDLREHNCLLYQLGGRVHDRWAFQRGRRSLTLTVAGDRVCDDADVVRRWALAGKGLVY 240 Query: 245 KSRLDVLADLRNGKLEALMEDYQGEASPLNLVCTHRMSLSPTVRALRELLGER 297 KS LDV D+R G+L L+ ++QGEA+P+NL+CTHR L+ V LR + ER Sbjct: 241 KSWLDVAEDVRAGRLRLLLPEWQGEATPMNLLCTHRAQLTRPVTLLRAFVRER 293 >VCA0635 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae Length = 313 Score = 267 bits (682), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 131/293 (44%), Positives = 191/293 (65%) Query: 5 MIRLEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 64 M L DL +FV A GS S AA +T A SAA++RLE ++ L RSTR +RLT Sbjct: 1 MKALNDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTH 60 Query: 65 DGERYLQYARNVLAEVNAGRDAVAHGRRVVGGNLSLSVPSDLGRNLMCQWLDEFLAQHPA 124 +GE +L + LA + G D +A R + G L +S PSDLGRNL+ W+DEF+A HP Sbjct: 61 EGEIFLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPN 120 Query: 125 VSLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALPLAPDNRRVLCASPDYLARHGRPR 184 V++++ +SDR+ DM+ PV++AIRY P DS+LVA+ L N RVLCASP+YLA H Sbjct: 121 VTVKLDLSDRLTDMYANPVDIAIRYGQPADSNLVAMLLCDSNERVLCASPEYLAAHPPIL 180 Query: 185 TPADLRQHNCLRYLLSDMLHSQWTFFKDGTPVQVQVSGDRVCDDGELVHRWAVEGRGIAY 244 P DL+ HNCL ++L+D LH++W ++G V V G+ C+DGE+VHR AV+G+GIA Sbjct: 181 HPDDLQHHNCLCFMLADTLHNKWILSRNGETHSVVVQGNPACNDGEVVHRLAVKGKGIAN 240 Query: 245 KSRLDVLADLRNGKLEALMEDYQGEASPLNLVCTHRMSLSPTVRALRELLGER 297 KS +D+ D+ +G+L ++ +++ P+ +VC R ++PT+RA +E + E+ Sbjct: 241 KSLMDISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREK 293 >RSc3280 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 303 Score = 190 bits (483), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 100/262 (38%), Positives = 152/262 (58%), Gaps = 1/262 (0%) Query: 5 MIRLEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 64 M +L+ + F+ ++GS++AAA DVTP + + LE LG RLL RSTR + +T Sbjct: 1 MDKLKQIEAFIAVVEHGSMAAAALTQDVTPVMIGRRINALEARLGVRLLHRSTRRIAVTE 60 Query: 65 DGERYLQYARNVLAEVNAGRDAVAHGRRVVGGNLSLSVPSDLGRNLMCQWLDEFLAQHPA 124 G +++ + L+E++ VA GR G+L +S P+ GR + FL +P Sbjct: 61 QGAVFMEQCKKALSELDRAELLVAEGRHKATGHLIVSAPAAFGRKHVAPHAPAFLRANPD 120 Query: 125 VSLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALPLAPDNRRVLCASPDYLARHGRPR 184 V L ++DRV D+ R+ ++ IR D + VA+ LA N+RV+C +PDY ARHG PR Sbjct: 121 VRLSFNLTDRVVDLVREGYDLGIRIGGAIDPNFVAIRLA-SNQRVVCGTPDYFARHGVPR 179 Query: 185 TPADLRQHNCLRYLLSDMLHSQWTFFKDGTPVQVQVSGDRVCDDGELVHRWAVEGRGIAY 244 T DL +HNCL + L W F +G V V+VSG+ C+DGEL+HRW EG G+ + Sbjct: 180 TLDDLSRHNCLAFNLQGGQQRGWYFQHNGRMVTVRVSGNLDCNDGELLHRWMGEGLGLGW 239 Query: 245 KSRLDVLADLRNGKLEALMEDY 266 +S ++ +L +G L +++DY Sbjct: 240 RSTWEIQPELESGALMTVLDDY 261 >VCA0991 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae Length = 308 Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 97/262 (37%), Positives = 144/262 (54%), Gaps = 1/262 (0%) Query: 5 MIRLEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 64 M + D+ +F N L+AA R+ ++PA +A ++ LE G +LL RSTR L LT Sbjct: 1 MDKFADMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTE 60 Query: 65 DGERYLQYARNVLAEVNAGRDAVAHGRRVVGGNLSLSVPSDLGRNLMCQWLDEFLAQHPA 124 G Y Q +L V + + G + V G L +S P D+G+ + L F Q+P Sbjct: 61 SGVLYHQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPE 120 Query: 125 VSLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALPLAPDNRRVLCASPDYLARHGRPR 184 V + ++D ++++ ++V IRY DSSL++ LA +RRVLCASP YLAR G P+ Sbjct: 121 VVPYLYLNDNISNLAESGLDVVIRYGELADSSLISRKLAT-SRRVLCASPAYLARKGIPK 179 Query: 185 TPADLRQHNCLRYLLSDMLHSQWTFFKDGTPVQVQVSGDRVCDDGELVHRWAVEGRGIAY 244 TP DL QH+CL + S+ W F ++ + V DDGE++ +WA+ G GIA Sbjct: 180 TPQDLAQHDCLAMVRSNEEMKTWHFQENEQHKVITVVPKSFADDGEVIRQWALAGMGIAL 239 Query: 245 KSRLDVLADLRNGKLEALMEDY 266 KS LDV DL +L +++ Y Sbjct: 240 KSILDVQDDLNQQRLVTVLDGY 261 >RSp0997 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 306 Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 156/294 (53%), Gaps = 5/294 (1%) Query: 10 DLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTPDGERY 69 +L FV A GSLSAAAR +T S + ++E +G L+ R+TR + LTP+GE + Sbjct: 10 ELGFFVALATAGSLSAAARNLGITTPAVSKRLAQMEARIGMPLVTRTTRRMSLTPEGEVF 69 Query: 70 LQYARNVLAEVNAGRDAVAHGRRVVGGNLSLSVPSDLGRNLMCQWLDEFLAQHPAVSLQV 129 L++AR +L E++ + + G L ++ GR + + E++ Q+P V +Q+ Sbjct: 70 LEHARRILGEIDDLDQLLTQAKGRPRGLLRVNATLGFGRRHIAPAISEYVRQYPGVDVQL 129 Query: 130 RISDRVADMFRQPVEVAIRYSPPEDSSLVALPLAPDNRRVLCASPDYLARHGRPRTPADL 189 +++ + +V IR+ P D+ ++A +AP NRR+LCA+PDYL RHG P PADL Sbjct: 130 QLTADPPPLNEDAFDVCIRFGEPPDARIIARKVAP-NRRLLCAAPDYLRRHGTPLAPADL 188 Query: 190 RQHNCLRYLLSDMLHSQWTFFK-DGTPVQ---VQVSGDRVCDDGELVHRWAVEGRGIAYK 245 +HNC+ + W GT + V V G+ +DGE+ WA+EG GI + Sbjct: 189 ARHNCIGIRQGSDAYGVWRLTSGKGTKRRTETVHVRGNLTTNDGEIAVNWALEGHGIVMR 248 Query: 246 SRLDVLADLRNGKLEALMEDYQGEASPLNLVCTHRMSLSPTVRALRELLGERVA 299 ++ DV LR G+L ++ Y + + V R LSP +R E L R + Sbjct: 249 AQWDVERYLRGGQLVQVLPLYATPEADIYAVYLQRHQLSPRIRLFVEFLAGRFS 302