BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0011.p         (270 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella mel...   193   4e-49
SMb20586 [K] COG1414 Transcriptional regulator Sme Sinorhizobium...   189   5e-48
AGl644 [K] COG1414 Transcriptional regulator Atu Agrobacterium t...   177   2e-44
Cgl2340 [K] COG1414 Transcriptional regulator Cgl Corynebacteriu...   177   3e-44
RSc2255 [K] COG1414 Transcriptional regulator Rso Ralstonia sola...   162   9e-40

>BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella melitensis
          Length = 256

 Score =  193 bits (490), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 100/242 (41%), Positives = 147/242 (60%)

Query: 25  DWIAGLEKGLLILEAFDYDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYLHSEGKTFA 84
           D++ G  KGL ++EAF  D  R++ A V+  TGL R  ARR LLTL  LGY   +GK F 
Sbjct: 5   DFVGGFAKGLRVIEAFGEDRPRLSIADVSKITGLDRATARRCLLTLAELGYAEYDGKFFM 64

Query: 85  LTPRVLKVGWSYFDSAPLPRILQPHLQQITGQTGEAVYASVLDGWDLVFIARNGTSRVMT 144
           L PR+L++G +Y    PLP I+QPHL +++   GE+  ASVLDG ++V+IAR    RV++
Sbjct: 65  LLPRILRLGHAYLSGTPLPTIIQPHLDRLSQSVGESASASVLDGAEIVYIARASQMRVIS 124

Query: 145 TGFVLGARVPAQLASPGIVMLGALPEQQVREWLATCAMTPFTPHTITDPDRLYELIAQAR 204
              + G+R+PA  AS G V+L  L E + R  L    +   TP T  DP++L E + + R
Sbjct: 125 INLMAGSRLPAYCASMGRVLLAWLDESEARTILEQTELRARTPFTQKDPEKLMEELRRIR 184

Query: 205 QQGYALVEQQLQTGVRGIAVPLKNRHAKVVGALSLSFPLAVESQEQTLARVLPALQQAAN 264
            QG+A+ +Q+L+ G+R IAVP+ N    VV AL++  P+A       + R+LP + +  +
Sbjct: 185 AQGFAVNDQELELGLRSIAVPVFNHRGAVVAALNIGAPVAHVEVSDLVGRILPEMLKIQS 244

Query: 265 AL 266
            L
Sbjct: 245 EL 246


>SMb20586 [K] COG1414 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 251

 Score =  189 bits (480), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 98/242 (40%), Positives = 146/242 (60%)

Query: 25  DWIAGLEKGLLILEAFDYDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYLHSEGKTFA 84
           D+++G  +GL ++EAF     R++ A  A  TGL R   RR LLTL  LGY   +GK F 
Sbjct: 5   DFVSGFARGLKVIEAFGEAQPRLSIADAAKITGLDRATVRRSLLTLSQLGYADYDGKFFT 64

Query: 85  LTPRVLKVGWSYFDSAPLPRILQPHLQQITGQTGEAVYASVLDGWDLVFIARNGTSRVMT 144
           LTP+ L++G +Y  + PLP I+QP+L Q+  + G++  ASVLDG ++V++AR    RVM+
Sbjct: 65  LTPKTLRLGHAYLSATPLPTIVQPYLDQLAEKAGQSASASVLDGTEIVYVARASQRRVMS 124

Query: 145 TGFVLGARVPAQLASPGIVMLGALPEQQVREWLATCAMTPFTPHTITDPDRLYELIAQAR 204
                G+R+PA  AS G V+L ALPE + RE L    +   TP T TDP+ L   + + R
Sbjct: 125 INLTPGSRLPAYCASMGRVLLAALPEAEAREILGRSELKANTPLTRTDPEELLTELRRVR 184

Query: 205 QQGYALVEQQLQTGVRGIAVPLKNRHAKVVGALSLSFPLAVESQEQTLARVLPALQQAAN 264
            +GYA+++Q+L+ G+  IAVP+ N   +V+ AL++    A     +   R LP L++   
Sbjct: 185 DEGYAIIDQELELGLCSIAVPVANDRGQVLAALNIGASAAHVPAREMAERFLPLLRETQA 244

Query: 265 AL 266
           AL
Sbjct: 245 AL 246


>AGl644 [K] COG1414 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 269

 Score =  177 bits (450), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/240 (38%), Positives = 143/240 (59%)

Query: 20  GLARRDWIAGLEKGLLILEAFDYDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYLHSE 79
            ++ RD + GL KGL ++EAF  +  R++ +  A   GL R   RR LLTL  LGY   +
Sbjct: 18  AVSERDMMGGLAKGLRVIEAFSAERPRLSISDAAEIAGLDRATTRRCLLTLSELGYAAYD 77

Query: 80  GKTFALTPRVLKVGWSYFDSAPLPRILQPHLQQITGQTGEAVYASVLDGWDLVFIARNGT 139
           GK F +TP+VL++G     + PLP+I+QP L +++ + G++   S+LD  ++V++AR   
Sbjct: 78  GKFFTVTPKVLRLGTGCLATMPLPKIVQPLLDRLSEEIGQSTSVSILDEAEIVYVARAAQ 137

Query: 140 SRVMTTGFVLGARVPAQLASPGIVMLGALPEQQVREWLATCAMTPFTPHTITDPDRLYEL 199
            RVM+   + G+R+PA   S G V+L A P ++ R+ L    +   T  TITD D L   
Sbjct: 138 QRVMSIALMPGSRLPAYCTSMGRVLLAAQPAERRRDILEASRLVARTEKTITDMDALLAE 197

Query: 200 IAQARQQGYALVEQQLQTGVRGIAVPLKNRHAKVVGALSLSFPLAVESQEQTLARVLPAL 259
           I     +GYAL++Q+++ G+R IAVPLK    + V AL++    +V S E+ + R LPAL
Sbjct: 198 IEVTGHRGYALIDQEVEIGLRSIAVPLKTVRGQTVAALNVGLAASVASMEELVERYLPAL 257


>Cgl2340 [K] COG1414 Transcriptional regulator Cgl Corynebacterium
           glutamicum
          Length = 255

 Score =  177 bits (448), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 93/242 (38%), Positives = 142/242 (58%)

Query: 25  DWIAGLEKGLLILEAFDYDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYLHSEGKTFA 84
           D++    +GL ++ +F  DN   T ++VA++TGLSR  ARR+L TL  LGY  +    F 
Sbjct: 7   DFVQSFARGLSVIRSFSADNPSQTLSEVASQTGLSRATARRFLHTLTDLGYAVNNDSRFQ 66

Query: 85  LTPRVLKVGWSYFDSAPLPRILQPHLQQITGQTGEAVYASVLDGWDLVFIARNGTSRVMT 144
           LTPRVL++G SY  +  LP I QP L+ ++ Q GE+   SVLDG D++++ R    R+MT
Sbjct: 67  LTPRVLELGASYLSALSLPAIAQPRLEVLSRQVGESSSMSVLDGTDIIYVCRVPVRRIMT 126

Query: 145 TGFVLGARVPAQLASPGIVMLGALPEQQVREWLATCAMTPFTPHTITDPDRLYELIAQAR 204
               +G R PA   S G +ML  LPE+++ E LA       T  ++T    + E I   R
Sbjct: 127 VNITIGTRFPAYATSMGRIMLANLPEEELDEMLAAAPPEQLTTRSLTSIASIREEIIATR 186

Query: 205 QQGYALVEQQLQTGVRGIAVPLKNRHAKVVGALSLSFPLAVESQEQTLARVLPALQQAAN 264
           ++G++LV+Q+L+ G+R +A P+ N   +VV ++++S   A  S E     VLP L + A 
Sbjct: 187 ERGWSLVDQELEPGLRSLAAPITNAQGEVVASINVSTQSASHSVEDIRKLVLPQLLETAQ 246

Query: 265 AL 266
           A+
Sbjct: 247 AI 248


>RSc2255 [K] COG1414 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 275

 Score =  162 bits (409), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 88/245 (35%), Positives = 143/245 (58%)

Query: 26  WIAGLEKGLLILEAFDYDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYLHSEGKTFAL 85
           ++    +GL ++ AF+ +    T ++VA  TGL+R  ARR LLTL  LGY+  EG+ F L
Sbjct: 27  YVQSFARGLSVIRAFNAERPAQTLSEVAEATGLTRAGARRILLTLVSLGYVSFEGRLFRL 86

Query: 86  TPRVLKVGWSYFDSAPLPRILQPHLQQITGQTGEAVYASVLDGWDLVFIARNGTSRVMTT 145
           TPR+L +G++Y  S P   + +P ++++     E+  ASVLDG ++V++ R  T +++  
Sbjct: 87  TPRILDLGFAYLTSMPFWNLAEPVMEELVQTVHESCSASVLDGTEIVYVLRVPTQKIIAL 146

Query: 146 GFVLGARVPAQLASPGIVMLGALPEQQVREWLATCAMTPFTPHTITDPDRLYELIAQARQ 205
              +G+R+PA   S G V+L  LPE ++   L      P T  TIT+ D L ++IA  R 
Sbjct: 147 NLSVGSRLPAFCTSMGRVLLSGLPEDRLDIVLRESDRRPRTQRTITEVDALKDVIAGVRA 206

Query: 206 QGYALVEQQLQTGVRGIAVPLKNRHAKVVGALSLSFPLAVESQEQTLARVLPALQQAANA 265
           QG+ALV+Q+L+ G+  ++ P++NR   ++ A+++S      S  Q   + L  LQQAA  
Sbjct: 207 QGWALVDQELEEGLISLSTPIRNRAGDIIAAMNISGQANRTSARQMTRQFLGPLQQAAER 266

Query: 266 LIHQV 270
           +   V
Sbjct: 267 ISSMV 271