BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0010.p (260 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl644 [K] COG1414 Transcriptional regulator Atu Agrobacterium t... 182 7e-46 BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella mel... 177 1e-44 SMb20586 [K] COG1414 Transcriptional regulator Sme Sinorhizobium... 170 3e-42 Cgl2340 [K] COG1414 Transcriptional regulator Cgl Corynebacteriu... 164 2e-40 RSc2255 [K] COG1414 Transcriptional regulator Rso Ralstonia sola... 152 6e-37 >AGl644 [K] COG1414 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 269 Score = 182 bits (461), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 97/244 (39%), Positives = 147/244 (60%) Query: 6 SVELDIQKRDLIEGLMKGFDVITAFTSESPQLTASEVAERVGLTRSAARRYLLTLVHTGM 65 S+ + + +RD++ GL KG VI AF++E P+L+ S+ AE GL R+ RR LLTL G Sbjct: 14 SLSMAVSERDMMGGLAKGLRVIEAFSAERPRLSISDAAEIAGLDRATTRRCLLTLSELGY 73 Query: 66 AASDGKKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVT 125 AA DGK F + P++L LG L + +P+ V P L RL++++ +ST+ S+LD EIVYV Sbjct: 74 AAYDGKFFTVTPKVLRLGTGCLATMPLPKIVQPLLDRLSEEIGQSTSVSILDEAEIVYVA 133 Query: 126 RVTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEITAYLDRVTLIPHTHMAMTDKAA 185 R ++++ PG+RLPAY T+ GRVLL + L+ L+ T +TD A Sbjct: 134 RAAQQRVMSIALMPGSRLPAYCTSMGRVLLAAQPAERRRDILEASRLVARTEKTITDMDA 193 Query: 186 LFAEIVTMRKQGYGITENQFEMGMRGIAIPVKNRNGRVIGALSVTSNIAACSREDAIARG 245 L AEI +GY + + + E+G+R IA+P+K G+ + AL+V + S E+ + R Sbjct: 194 LLAEIEVTGHRGYALIDQEVEIGLRSIAVPLKTVRGQTVAALNVGLAASVASMEELVERY 253 Query: 246 VPAL 249 +PAL Sbjct: 254 LPAL 257 >BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella melitensis Length = 256 Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 89/239 (37%), Positives = 140/239 (58%) Query: 11 IQKRDLIEGLMKGFDVITAFTSESPQLTASEVAERVGLTRSAARRYLLTLVHTGMAASDG 70 +++ D + G KG VI AF + P+L+ ++V++ GL R+ ARR LLTL G A DG Sbjct: 1 MRETDFVGGFAKGLRVIEAFGEDRPRLSIADVSKITGLDRATARRCLLTLAELGYAEYDG 60 Query: 71 KKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAA 130 K F L+PR+L LG +YL +P + P L RL+Q + ES + S+LDG EIVY+ R + Sbjct: 61 KFFMLLPRILRLGHAYLSGTPLPTIIQPHLDRLSQSVGESASASVLDGAEIVYIARASQM 120 Query: 131 QLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEITAYLDRVTLIPHTHMAMTDKAALFAEI 190 ++++ G+RLPAY + GRVLL +++E L++ L T D L E+ Sbjct: 121 RVISINLMAGSRLPAYCASMGRVLLAWLDESEARTILEQTELRARTPFTQKDPEKLMEEL 180 Query: 191 VTMRKQGYGITENQFEMGMRGIAIPVKNRNGRVIGALSVTSNIAACSREDAIARGVPAL 249 +R QG+ + + + E+G+R IA+PV N G V+ AL++ + +A D + R +P + Sbjct: 181 RRIRAQGFAVNDQELELGLRSIAVPVFNHRGAVVAALNIGAPVAHVEVSDLVGRILPEM 239 >SMb20586 [K] COG1414 Transcriptional regulator Sme Sinorhizobium meliloti Length = 251 Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 91/248 (36%), Positives = 141/248 (56%) Query: 11 IQKRDLIEGLMKGFDVITAFTSESPQLTASEVAERVGLTRSAARRYLLTLVHTGMAASDG 70 +++ D + G +G VI AF P+L+ ++ A+ GL R+ RR LLTL G A DG Sbjct: 1 MRETDFVSGFARGLKVIEAFGEAQPRLSIADAAKITGLDRATVRRSLLTLSQLGYADYDG 60 Query: 71 KKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAA 130 K F L P+ L LG +YL + +P V P+L +L ++ +S + S+LDG EIVYV R + Sbjct: 61 KFFTLTPKTLRLGHAYLSATPLPTIVQPYLDQLAEKAGQSASASVLDGTEIVYVARASQR 120 Query: 131 QLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEITAYLDRVTLIPHTHMAMTDKAALFAEI 190 ++++ PG+RLPAY + GRVLL +AE L R L +T + TD L E+ Sbjct: 121 RVMSINLTPGSRLPAYCASMGRVLLAALPEAEAREILGRSELKANTPLTRTDPEELLTEL 180 Query: 191 VTMRKQGYGITENQFEMGMRGIAIPVKNRNGRVIGALSVTSNIAACSREDAIARGVPALQ 250 +R +GY I + + E+G+ IA+PV N G+V+ AL++ ++ A + R +P L+ Sbjct: 181 RRVRDEGYAIIDQELELGLCSIAVPVANDRGQVLAALNIGASAAHVPAREMAERFLPLLR 240 Query: 251 TTANTLMM 258 T L + Sbjct: 241 ETQAALRL 248 >Cgl2340 [K] COG1414 Transcriptional regulator Cgl Corynebacterium glutamicum Length = 255 Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 143/245 (58%) Query: 12 QKRDLIEGLMKGFDVITAFTSESPQLTASEVAERVGLTRSAARRYLLTLVHTGMAASDGK 71 Q D ++ +G VI +F++++P T SEVA + GL+R+ ARR+L TL G A ++ Sbjct: 4 QSPDFVQSFARGLSVIRSFSADNPSQTLSEVASQTGLSRATARRFLHTLTDLGYAVNNDS 63 Query: 72 KFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAAQ 131 +F L PR+L LG SYL + +P P L+ L++Q+ ES++ S+LDG +I+YV RV + Sbjct: 64 RFQLTPRVLELGASYLSALSLPAIAQPRLEVLSRQVGESSSMSVLDGTDIIYVCRVPVRR 123 Query: 132 LVNAGFEPGTRLPAYTTTAGRVLLGMREDAEITAYLDRVTLIPHTHMAMTDKAALFAEIV 191 ++ GTR PAY T+ GR++L + E+ L T ++T A++ EI+ Sbjct: 124 IMTVNITIGTRFPAYATSMGRIMLANLPEEELDEMLAAAPPEQLTTRSLTSIASIREEII 183 Query: 192 TMRKQGYGITENQFEMGMRGIAIPVKNRNGRVIGALSVTSNIAACSREDAIARGVPALQT 251 R++G+ + + + E G+R +A P+ N G V+ +++V++ A+ S ED +P L Sbjct: 184 ATRERGWSLVDQELEPGLRSLAAPITNAQGEVVASINVSTQSASHSVEDIRKLVLPQLLE 243 Query: 252 TANTL 256 TA + Sbjct: 244 TAQAI 248 >RSc2255 [K] COG1414 Transcriptional regulator Rso Ralstonia solanacearum Length = 275 Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 85/215 (39%), Positives = 126/215 (58%), Gaps = 2/215 (0%) Query: 17 IEGLMKGFDVITAFTSESPQLTASEVAERVGLTRSAARRYLLTLVHTGMAASDGKKFWLM 76 ++ +G VI AF +E P T SEVAE GLTR+ ARR LLTLV G + +G+ F L Sbjct: 28 VQSFARGLSVIRAFNAERPAQTLSEVAEATGLTRAGARRILLTLVSLGYVSFEGRLFRLT 87 Query: 77 PRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAAQLVNAG 136 PR+L+LG +YL S P ++ L Q + ES + S+LDG EIVYV RV +++ Sbjct: 88 PRILDLGFAYLTSMPFWNLAEPVMEELVQTVHESCSASVLDGTEIVYVLRVPTQKIIALN 147 Query: 137 FEPGTRLPAYTTTAGRVLL-GMREDAEITAYLDRVTLIPHTHMAMTDKAALFAEIVTMRK 195 G+RLPA+ T+ GRVLL G+ ED + L P T +T+ AL I +R Sbjct: 148 LSVGSRLPAFCTSMGRVLLSGLPED-RLDIVLRESDRRPRTQRTITEVDALKDVIAGVRA 206 Query: 196 QGYGITENQFEMGMRGIAIPVKNRNGRVIGALSVT 230 QG+ + + + E G+ ++ P++NR G +I A++++ Sbjct: 207 QGWALVDQELEEGLISLSTPIRNRAGDIIAAMNIS 241