BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0208.p (221 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ygcZ [GEPR] COG0477 Permeases of the major facilitator superfami... 72 1e-12 Z4105 [GEPR] COG0477 Permeases of the major facilitator superfam... 72 1e-12 ECs3649 [GEPR] COG0477 Permeases of the major facilitator superf... 72 1e-12 STM3698 [GEPR] COG0477 Permeases of the major facilitator superf... 70 5e-12 STM2962 [GEPR] COG0477 Permeases of the major facilitator superf... 69 6e-12 >ygcZ [GEPR] COG0477 Permeases of the major facilitator superfamily Eco Escherichia coli K12 Length = 450 Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 12/185 (6%) Query: 7 LDGINRTRRVP---RLETLRQVFTSWNVIGVAIGYGCMIGISNIFMSWIPTYLVTVKGFA 63 +D N +VP + ++Q+ S +IGV IG C+ ++ F++W P YLV +G + Sbjct: 227 MDQQNTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMS 286 Query: 64 SVKMGFLASAPFIGAVAGNMLGGVISDRLLGGRRKPMMLLGALGTAVMTLMLVEAPDSVL 123 +K GF+AS P + G +LGG+ISD L+ RR + + VM ++L Sbjct: 287 ILKAGFVASVPAVCGFIGGVLGGIISDWLM--RRTGSLNIARKTPIVMGMLLSMVMVFCN 344 Query: 124 YLGAMLMLSGLML------GIGFAGYSAYPMGLATKSTYPTAFGIVNSLGQIGGACAPLA 177 Y+ M+ G M GIG G+ A A K + G+ N G I G P+A Sbjct: 345 YVNVEWMIIGFMALAFFGKGIGALGW-AVMADTAPKEISGLSGGLFNMFGNISGIVTPIA 403 Query: 178 VGMLL 182 +G ++ Sbjct: 404 IGYIV 408 >Z4105 [GEPR] COG0477 Permeases of the major facilitator superfamily EcZ Escherichia coli O157:H7 EDL933 Length = 450 Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 12/185 (6%) Query: 7 LDGINRTRRVP---RLETLRQVFTSWNVIGVAIGYGCMIGISNIFMSWIPTYLVTVKGFA 63 +D N +VP + ++Q+ S +IGV IG C+ ++ F++W P YLV +G + Sbjct: 227 MDQQNTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMS 286 Query: 64 SVKMGFLASAPFIGAVAGNMLGGVISDRLLGGRRKPMMLLGALGTAVMTLMLVEAPDSVL 123 +K GF+AS P + G +LGG+ISD L+ RR + + VM ++L Sbjct: 287 ILKAGFVASVPAVCGFIGGVLGGIISDWLM--RRTGSLNIARKTPIVMGMLLSMVMVFCN 344 Query: 124 YLGAMLMLSGLML------GIGFAGYSAYPMGLATKSTYPTAFGIVNSLGQIGGACAPLA 177 Y+ M+ G M GIG G+ A A K + G+ N G I G P+A Sbjct: 345 YVNVEWMIIGFMALAFFGKGIGALGW-AVMADTAPKEISGLSGGLFNMFGNISGIVTPIA 403 Query: 178 VGMLL 182 +G ++ Sbjct: 404 IGYIV 408 >ECs3649 [GEPR] COG0477 Permeases of the major facilitator superfamily Ecs Escherichia coli O157:H7 Length = 450 Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 12/185 (6%) Query: 7 LDGINRTRRVP---RLETLRQVFTSWNVIGVAIGYGCMIGISNIFMSWIPTYLVTVKGFA 63 +D N +VP + ++Q+ S +IGV IG C+ ++ F++W P YLV +G + Sbjct: 227 MDQQNTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMS 286 Query: 64 SVKMGFLASAPFIGAVAGNMLGGVISDRLLGGRRKPMMLLGALGTAVMTLMLVEAPDSVL 123 +K GF+AS P + G +LGG+ISD L+ RR + + VM ++L Sbjct: 287 ILKAGFVASVPAVCGFIGGVLGGIISDWLM--RRTGSLNIARKTPIVMGMLLSMVMVFCN 344 Query: 124 YLGAMLMLSGLML------GIGFAGYSAYPMGLATKSTYPTAFGIVNSLGQIGGACAPLA 177 Y+ M+ G M GIG G+ A A K + G+ N G I G P+A Sbjct: 345 YVNVEWMIIGFMALAFFGKGIGALGW-AVMADTAPKEISGLSGGLFNMFGNISGIVTPIA 403 Query: 178 VGMLL 182 +G ++ Sbjct: 404 IGYIV 408 >STM3698 [GEPR] COG0477 Permeases of the major facilitator superfamily Sty Salmonella typhimurium LT2 Length = 436 Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 13/209 (6%) Query: 14 RRVPRLETLRQVFT---SWNVIGVAIGYGCMIGISNIFMSWIPTYLVTVKGFASVKMGFL 70 ++ P+ T Q+ T + +IGV IG C+ I+ F++W PTYL KG + +K+GF+ Sbjct: 221 KKEPQKITFAQIKTVCVNRMMIGVYIGQFCVTSITWFFLTWFPTYLYQAKGMSILKVGFV 280 Query: 71 ASAPFIGAVAGNMLGGVISDRLLGG------RRKPMMLLGALGTAVMTLMLVEAPDSVLY 124 AS P I G +LGGV SD LL RK ++ G L + V+ + + + V+ Sbjct: 281 ASIPAIAGFIGGLLGGVFSDWLLKRGYSLTVARKLPVICGMLLSCVIVIANYTSSEFVVI 340 Query: 125 LGAMLMLSGLMLGIGFAGYSAYPMGLATKSTYPTAFGIVNSLGQIGGACAPLAVGMLL-D 183 A + L+ G G G+ + K A G+ N G + PL +G++L + Sbjct: 341 --AAMSLAFFAKGFGNLGWCVLS-DTSPKEVLGIAGGVFNMCGNMASIVTPLVIGVILAN 397 Query: 184 RYDWTSVFLYMVGTSLLCLVLLLSVVEPI 212 + LY+ L+ L+ L +V P+ Sbjct: 398 TQSFDFAILYVGSMGLIGLISYLFIVGPL 426 >STM2962 [GEPR] COG0477 Permeases of the major facilitator superfamily Sty Salmonella typhimurium LT2 Length = 452 Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 24/191 (12%) Query: 7 LDGINRTRRVP---RLETLRQVFTSWNVIGVAIGYGCMIGISNIFMSWIPTYLVTVKGFA 63 +D + +VP + ++Q+ S +IGV IG C+ ++ F++W P YLV +G + Sbjct: 227 MDQKDTKAKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMS 286 Query: 64 SVKMGFLASAPFIGAVAGNMLGGVISDRL------LGGRRKPMMLLGALGTAVMTLMLVE 117 +K GF+AS P + G +LGG+ISD L L RK ++LG L + VM Sbjct: 287 ILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKTPIVLGMLLSMVMVF---- 342 Query: 118 APDSVLYLGAMLMLSGLML------GIGFAGYSAYPMGLATKSTYPTAFGIVNSLGQIGG 171 Y+ M+ G M GIG G++ A K + G+ N G I G Sbjct: 343 ----CNYVNVEWMIIGFMALAFFGKGIGALGWAVMA-DTAPKEISGLSGGLFNMFGNISG 397 Query: 172 ACAPLAVGMLL 182 P+A+G ++ Sbjct: 398 IVTPIAIGYIV 408