BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0204.p (193 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2910 [S] COG1971 Predicted membrane protein Pae Pseudomonas ae... 230 1e-60 STM1834 [S] COG1971 Predicted membrane protein Sty Salmonella ty... 214 1e-55 yebN [S] COG1971 Predicted membrane protein Eco Escherichia coli... 211 7e-55 ECs2531 [S] COG1971 Predicted membrane protein Ecs Escherichia c... 211 8e-55 Z2864 [S] COG1971 Predicted membrane protein EcZ Escherichia col... 210 1e-54 >PA2910 [S] COG1971 Predicted membrane protein Pae Pseudomonas aeruginosa Length = 189 Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 121/191 (63%), Positives = 149/191 (78%), Gaps = 2/191 (1%) Query: 1 MNFPALLLLALAMSTDAFAAAIGKGAAMQKPRFLQALRIGLLFGVIEAITPLIGWFAGSV 60 MN +L+ LA AMSTDAFAAAIGKG+++ +PR +ALR G++FGVIEAITPL+GW G Sbjct: 1 MNPVSLIFLAFAMSTDAFAAAIGKGSSLDRPRLSEALRTGIIFGVIEAITPLVGWLLGQA 60 Query: 61 ATKWVSEWDHWIAFVLLLVLGARMIREGLSDDDEEEDANATPQKQSVVMLALTAVATSID 120 A+++V++WDHWIAFVLL++LG MI GL D E P + S +LA+TA+ATSID Sbjct: 61 ASQFVADWDHWIAFVLLVLLGLHMIHNGLRADHATEQEK--PGQHSFWILAVTALATSID 118 Query: 121 AMAVGVGLAFIDVNILEAALLIGLATTTMVTIGVMVGRVLGHLIGKRAEIIGGVVLIGVG 180 A+AVGVGLAF+DVNI AA IGLAT TMVT+G M+GR LG + GKRAE++GGVVLI VG Sbjct: 119 ALAVGVGLAFVDVNIFLAAGAIGLATMTMVTLGTMLGRALGAVTGKRAEMVGGVVLILVG 178 Query: 181 AAILYEHLSRA 191 A ILYEHLS A Sbjct: 179 ATILYEHLSAA 189 >STM1834 [S] COG1971 Predicted membrane protein Sty Salmonella typhimurium LT2 Length = 206 Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 110/189 (58%), Positives = 144/189 (76%), Gaps = 4/189 (2%) Query: 1 MNFPALLLLALAMSTDAFAAAIGKGAAMQKPRFLQALRIGLLFGVIEAITPLIGWFAGSV 60 M+F A +LLA MS DAFAA+IGKGA + KP+F +ALR GL+FG +E +TPLIGW G + Sbjct: 19 MHFTATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGLGIL 78 Query: 61 ATKWVSEWDHWIAFVLLLVLGARMIREGLSDDDEEEDANATP-QKQSVVMLALTAVATSI 119 A+K+V EW+HWIAFVLL+ LG RMI EG+ +E++ TP ++ S +L TA+ATS+ Sbjct: 79 ASKFVLEWNHWIAFVLLIFLGGRMIIEGIRGGSDEDE---TPLRRHSFWLLVTTAIATSL 135 Query: 120 DAMAVGVGLAFIDVNILEAALLIGLATTTMVTIGVMVGRVLGHLIGKRAEIIGGVVLIGV 179 DAMAVGVGLAF+ VNI+ AL IG AT M T+G+M+GR +G ++GKRAEI+GGVVLIG+ Sbjct: 136 DAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMIGRFIGPMLGKRAEILGGVVLIGI 195 Query: 180 GAAILYEHL 188 G IL+ H Sbjct: 196 GVQILWTHF 204 >yebN [S] COG1971 Predicted membrane protein Eco Escherichia coli K12 Length = 206 Score = 211 bits (537), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 109/190 (57%), Positives = 141/190 (74%), Gaps = 4/190 (2%) Query: 1 MNFPALLLLALAMSTDAFAAAIGKGAAMQKPRFLQALRIGLLFGVIEAITPLIGWFAGSV 60 MN A +LLA MS DAFAA+IGKGA + KP+F +ALR GL+FG +E +TPLIGW G + Sbjct: 19 MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGML 78 Query: 61 ATKWVSEWDHWIAFVLLLVLGARMIREGLSD-DDEEEDANATPQKQSVVMLALTAVATSI 119 A+++V EW+HWIAFVLL+ LG RMI EG DDE+E+ ++ +L TA+ATS+ Sbjct: 79 ASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPR---RRHGFWLLVTTAIATSL 135 Query: 120 DAMAVGVGLAFIDVNILEAALLIGLATTTMVTIGVMVGRVLGHLIGKRAEIIGGVVLIGV 179 DAMAVGVGLAF+ VNI+ AL IG AT M T+G+MVGR +G +IGK+AEI+GG+VLIG+ Sbjct: 136 DAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGI 195 Query: 180 GAAILYEHLS 189 G IL+ H Sbjct: 196 GVQILWTHFH 205 >ECs2531 [S] COG1971 Predicted membrane protein Ecs Escherichia coli O157:H7 Length = 206 Score = 211 bits (537), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 109/190 (57%), Positives = 141/190 (74%), Gaps = 4/190 (2%) Query: 1 MNFPALLLLALAMSTDAFAAAIGKGAAMQKPRFLQALRIGLLFGVIEAITPLIGWFAGSV 60 MN A +LLA MS DAFAA+IGKGA + KP+F +ALR GL+FG +E +TPLIGW G + Sbjct: 19 MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGML 78 Query: 61 ATKWVSEWDHWIAFVLLLVLGARMIREGLSD-DDEEEDANATPQKQSVVMLALTAVATSI 119 A+++V EW+HWIAFVLL+ LG RMI EG DDE+E+ ++ +L TA+ATS+ Sbjct: 79 ASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPR---RRHGFWLLVTTAIATSL 135 Query: 120 DAMAVGVGLAFIDVNILEAALLIGLATTTMVTIGVMVGRVLGHLIGKRAEIIGGVVLIGV 179 DAMAVGVGLAF+ VNI+ AL IG AT M T+G+MVGR +G +IGK+AEI+GG+VLIG+ Sbjct: 136 DAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGI 195 Query: 180 GAAILYEHLS 189 G IL+ H Sbjct: 196 GVQILWTHFH 205 >Z2864 [S] COG1971 Predicted membrane protein EcZ Escherichia coli O157:H7 EDL933 Length = 206 Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 109/190 (57%), Positives = 140/190 (73%), Gaps = 4/190 (2%) Query: 1 MNFPALLLLALAMSTDAFAAAIGKGAAMQKPRFLQALRIGLLFGVIEAITPLIGWFAGSV 60 MN A +LLA MS DAFAA+IGKGA + KP+F +ALR GL+FG +E +TPLIGW G + Sbjct: 19 MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGML 78 Query: 61 ATKWVSEWDHWIAFVLLLVLGARMIREGLSD-DDEEEDANATPQKQSVVMLALTAVATSI 119 A+++V EW+HWIAFVLL+ LG RMI EG DDE+E+ ++ +L TA+ATS+ Sbjct: 79 ASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPR---RRHGFWLLVTTAIATSL 135 Query: 120 DAMAVGVGLAFIDVNILEAALLIGLATTTMVTIGVMVGRVLGHLIGKRAEIIGGVVLIGV 179 DAMAVGVGLAF+ VNI+ AL IG AT M T+G+MVGR +G +IGK+AEI GG+VLIG+ Sbjct: 136 DAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEIXGGLVLIGI 195 Query: 180 GAAILYEHLS 189 G IL+ H Sbjct: 196 GVQILWTHFH 205