BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0149.p         (197 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0010 [V] COG0841 Cation/multidrug efflux pump Rso Ralstonia s...   293   2e-79
AGl3217 [V] COG0841 Cation/multidrug efflux pump Atu Agrobacteri...   220   1e-57
PA4598 [V] COG0841 Cation/multidrug efflux pump Pae Pseudomonas ...   218   5e-57
SMc02867 [V] COG0841 Cation/multidrug efflux pump Sme Sinorhizob...   216   2e-56
yhiV [V] COG0841 Cation/multidrug efflux pump Eco Escherichia co...   206   3e-53

>RSc0010 [V] COG0841 Cation/multidrug efflux pump Rso Ralstonia solanacearum
          Length = 1049

 Score =  293 bits (750), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 141/181 (77%), Positives = 163/181 (90%), Gaps = 1/181 (0%)

Query: 1   MGKFFIDRPVFAWVLAIFIMLGGALAITGLPVAQYPSIAPPTIVVTATYPGATAQTLDDS 60
           M KFFIDRPVFAWVLA+FI++ GA++IT LP+AQYP+IAPP+I++TATYPGA+A+TLDD+
Sbjct: 1   MAKFFIDRPVFAWVLALFIIVAGAISITQLPIAQYPTIAPPSIIITATYPGASAKTLDDA 60

Query: 61  VTSLIEQEMNGADGLQYIESQSQA-NGQVQITITFSPETNPDLAAVDVQNRLKRVEARLP 119
           VTS+IEQEMNGADGL YIES SQA NGQ  IT+TF P T+P LA VDVQNRLKRVEARLP
Sbjct: 61  VTSIIEQEMNGADGLLYIESVSQAGNGQATITVTFKPGTDPALAQVDVQNRLKRVEARLP 120

Query: 120 AAVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFG 179
           ++VTQQGVQV K+RSNFLLF  L S DGK+DPVALGDY+SRNVLNE+KRVPGVGQA LFG
Sbjct: 121 SSVTQQGVQVDKTRSNFLLFATLISKDGKMDPVALGDYISRNVLNEVKRVPGVGQAVLFG 180

Query: 180 T 180
           T
Sbjct: 181 T 181


>AGl3217 [V] COG0841 Cation/multidrug efflux pump Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 1044

 Score =  220 bits (561), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/180 (57%), Positives = 136/180 (75%)

Query: 1   MGKFFIDRPVFAWVLAIFIMLGGALAITGLPVAQYPSIAPPTIVVTATYPGATAQTLDDS 60
           M +FFIDRP+FAWV+AIFIML G LAI  LP+AQYP++APP I +   YPGA+ + +  S
Sbjct: 1   MARFFIDRPIFAWVVAIFIMLAGLLAIPMLPIAQYPNVAPPQISIGTNYPGASPEDIYQS 60

Query: 61  VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120
           VT  IE+E+NG  GL Y ES S+++G++ I +TF P TN   A V+VQNR+ RVE RLP 
Sbjct: 61  VTRPIEEELNGVPGLIYFESTSESSGRISINVTFEPGTNIGEAQVEVQNRIARVEPRLPR 120

Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180
           +VTQQG++V ++ ++FL+ + L+S DG  D + LGDYLSRNVL E++RVPGVG AQLF T
Sbjct: 121 SVTQQGLRVEQAGTSFLMMVALTSVDGNTDAIGLGDYLSRNVLGELRRVPGVGSAQLFAT 180


>PA4598 [V] COG0841 Cation/multidrug efflux pump Pae Pseudomonas aeruginosa
          Length = 1043

 Score =  218 bits (556), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 103/182 (56%), Positives = 136/182 (74%), Gaps = 2/182 (1%)

Query: 1   MGKFFIDRPVFAWVLAIFIMLGGALAITGLPVAQYPSIAPPTIVVTATYPGATAQTLDDS 60
           M +FFI RP FAWV+A+FI L G L I+ LPVAQYP++APP I +TATYPGA+A+ L DS
Sbjct: 1   MSEFFIKRPNFAWVVALFISLAGLLVISKLPVAQYPNVAPPQITITATYPGASAKVLVDS 60

Query: 61  VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120
           VTS++E+ +NGA GL Y ES + +NG  +I +TF P T+PDLA VDVQNRLK+ EAR+P 
Sbjct: 61  VTSVLEESLNGAKGLLYFESTNNSNGTAEIVVTFEPGTDPDLAQVDVQNRLKKAEARMPQ 120

Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDG--KLDPVALGDYLSRNVLNEIKRVPGVGQAQLF 178
           AV  QG+QV ++ + FLL   LS  +G  + D  ALGDY +RN+ NE++R+PGVG+ Q F
Sbjct: 121 AVLTQGLQVEQTSAGFLLIYALSYKEGAQRSDTTALGDYAARNINNELRRLPGVGKLQFF 180

Query: 179 GT 180
            +
Sbjct: 181 SS 182


>SMc02867 [V] COG0841 Cation/multidrug efflux pump Sme Sinorhizobium meliloti
          Length = 1048

 Score =  216 bits (551), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/180 (60%), Positives = 136/180 (75%)

Query: 1   MGKFFIDRPVFAWVLAIFIMLGGALAITGLPVAQYPSIAPPTIVVTATYPGATAQTLDDS 60
           M  FFIDRP+FAWV+AIFIM+ G +AI  LPV+QYP +APP I +   YPGA++Q    S
Sbjct: 1   MPSFFIDRPIFAWVVAIFIMIAGIIAIPLLPVSQYPDVAPPQISINTNYPGASSQDTYQS 60

Query: 61  VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120
           VT LIE E+NG +GL Y ES + ++G V I  TF P T+P  A+VD+QNR++RVE RLP 
Sbjct: 61  VTRLIEDELNGVEGLLYFESSTSSSGSVSIDATFQPGTDPSQASVDIQNRVQRVEPRLPD 120

Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180
            V QQGVQV ++ + FLL I L+STDG +D + LGDYLSRNVL+EI+RVPGVG+AQLF T
Sbjct: 121 PVRQQGVQVDEAGAGFLLIISLTSTDGSMDAIGLGDYLSRNVLSEIQRVPGVGRAQLFAT 180


>yhiV [V] COG0841 Cation/multidrug efflux pump Eco Escherichia coli K12
          Length = 1037

 Score =  206 bits (524), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/180 (56%), Positives = 124/180 (68%)

Query: 1   MGKFFIDRPVFAWVLAIFIMLGGALAITGLPVAQYPSIAPPTIVVTATYPGATAQTLDDS 60
           M  +FIDRPVFAWVLAI +ML G LAI  LPVAQYP IAPPTI V+ATYPGA AQT++DS
Sbjct: 1   MANYFIDRPVFAWVLAIIMMLAGGLAIMNLPVAQYPQIAPPTITVSATYPGADAQTVEDS 60

Query: 61  VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120
           VT +IEQ MNG DGL Y+ S S A G   IT+TF   T+PD+A V VQN+L+     LP 
Sbjct: 61  VTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQNKLQLAMPSLPE 120

Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180
           AV QQG+ V KS SN L+     S +G L+   + DY++ N+ + + R  GVG  QLFG+
Sbjct: 121 AVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRTAGVGSVQLFGS 180