BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0106.p (241 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0692 [M] COG0859 ADP-heptose Rso Ralstonia solanacearum 185 8e-47 PM1843 [M] COG0859 ADP-heptose Pmu Pasteurella multocida 131 1e-30 PA5011 [M] COG0859 ADP-heptose Pae Pseudomonas aeruginosa 124 2e-28 STM3712 [M] COG0859 ADP-heptose Sty Salmonella typhimurium LT2 120 4e-27 YPO0056 [M] COG0859 ADP-heptose Ype Yersinia pestis 119 6e-27 >RSc0692 [M] COG0859 ADP-heptose Rso Ralstonia solanacearum Length = 332 Score = 185 bits (470), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 96/194 (49%), Positives = 132/194 (68%), Gaps = 2/194 (1%) Query: 2 PMVADIHRHFPAAQIDWVVEEGYTSLVGLNPHVRKIIPIALRRWRKTLFSAVTRAEIGAF 61 P+VADI R P A+IDWVVEEG+ +V + V+ +IP ALRRWRK+L S T E+ AF Sbjct: 19 PVVADILRAHPGAEIDWVVEEGFAGIVRIVRGVQDVIPFALRRWRKSLASGATWGEMAAF 78 Query: 62 RRELQAERYDLVFDTQGLLKTSVVMRMARLAPQGRRIGLANATEGSGYEPISRIFHDQSI 121 RR L+A+ YD+V DTQGL+KT++V ARLAP G GL N T+G+GYEP++R+F+ + + Sbjct: 79 RRALRAKPYDVVLDTQGLIKTALVAAQARLAPNGFVAGLGNRTDGAGYEPLARLFYQREV 138 Query: 122 PVDLRTHAVTRARLVAAAALGYQLEGQPDFALRPPEPARWAWMPEQPYVVFFHGTARAAK 181 ++ R H V R+R + A ALGY + DF L+PP +A +P +PYV H T+RA K Sbjct: 139 HMEPRVHVVERSRRMVAEALGYAVPETIDFGLQPPASLPFA-LP-RPYVALVHATSRADK 196 Query: 182 QWPQAQWIKLGQAL 195 WPQ W+ + +AL Sbjct: 197 GWPQDAWVDVARAL 210 >PM1843 [M] COG0859 ADP-heptose Pmu Pasteurella multocida Length = 321 Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/198 (40%), Positives = 110/198 (55%), Gaps = 12/198 (6%) Query: 1 MPMVADIHRHFPAAQIDWVVEEGYTSLVGLNPHVRKIIPIALRRWRKTLFSAVTRAEIGA 60 +P + D R P Q+DWVVEE + + + VR++IPIALRRWRKT F+A+TR + Sbjct: 18 LPALTDAQRALPNLQVDWVVEESFAEIPHWHSAVRQVIPIALRRWRKTPFTALTRKQWKT 77 Query: 61 FRRELQAERYDLVFDTQGLLKTSVV-MRMARLAPQGRRIGLANATEGSGYEPISRIFHDQ 119 +R LQ+E+YD V D QGLLK+++ R+AR G R G S EPI+ F+D+ Sbjct: 78 YRTLLQSEQYDAVIDAQGLLKSALFATRLAR----GTRHGY---DRHSIREPIAACFYDK 130 Query: 120 SIPVDLRTHAVTRARLVAAAALGYQL-EGQPDFALRPPEPARWAWMPEQPYVVFFHGTAR 178 + + HAV R R + A +L Y L Q D+ + P M PYV+FFHGT R Sbjct: 131 KYAISYQQHAVERIRQLFAQSLNYPLPHTQGDYGIARHFPQHAQTM---PYVLFFHGTTR 187 Query: 179 AAKQWPQAQWIKLGQALA 196 K P QW L + L Sbjct: 188 QDKFLPDRQWRTLAEKLT 205 >PA5011 [M] COG0859 ADP-heptose Pae Pseudomonas aeruginosa Length = 355 Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/197 (37%), Positives = 104/197 (52%), Gaps = 9/197 (4%) Query: 1 MPMVADIHRHFPAAQIDWVVEEGYTSLVGLNPHVRKIIPIALRRWRKTLFSAVTRAEIGA 60 +P + D R P Q DWVVEEG+ + +P V ++IP+A+RRWRK L+ + E Sbjct: 18 LPALTDAARAIPGIQFDWVVEEGFAEIPAWHPAVARVIPVAIRRWRKNLWQTLRNGEWRR 77 Query: 61 FRRELQAERYDLVFDTQGLLKTSVVMRMARLAPQGRRIGLANATEGSGYEPISRIFHDQS 120 F++ L+ YDLV D QGLLK++ + R P +A S EP++ F+ ++ Sbjct: 78 FKQRLKEVDYDLVIDAQGLLKSAWLTRYVGKTP------VAGLDRDSAREPLASRFYRRA 131 Query: 121 IPVDLRTHAVTRARLVAAAALGYQL-EGQPDFALRPPEPARWAWMPEQPYVVFFHGTARA 179 PV HAV R R + A AL Y L E D+ L + A P PY+VF HGT Sbjct: 132 YPVAWGQHAVERTRQLFAQALDYPLPESVGDYGLDREQLADAD--PGAPYLVFLHGTTWV 189 Query: 180 AKQWPQAQWIKLGQALA 196 K WP+A W +L + + Sbjct: 190 TKHWPEAYWRELAERMC 206 >STM3712 [M] COG0859 ADP-heptose Sty Salmonella typhimurium LT2 Length = 317 Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 71/192 (36%), Positives = 107/192 (55%), Gaps = 8/192 (4%) Query: 1 MPMVADIHRHFPAAQIDWVVEEGYTSLVGLNPHVRKIIPIALRRWRKTLFSAVTRAEIGA 60 +P + D + P Q DW VEEG+ + + V ++IP+A+RRWRK FSA +AE A Sbjct: 18 LPALTDAQQAIPGIQFDWAVEEGFAQIPSWHSAVDRVIPVAIRRWRKAWFSAPIKAERTA 77 Query: 61 FRRELQAERYDLVFDTQGLLKTSVVMRMARLAPQGRRIGLANATEGSGYEPISRIFHDQS 120 FRR + A +YD V D QGL+K++ + + RLA G + G+ +T EP++ +F+++ Sbjct: 78 FRRAVCANQYDAVIDAQGLVKSAAL--VTRLA-HGIKHGMDWST---AREPLASLFYNRK 131 Query: 121 IPVDLRTHAVTRARLVAAAALGYQL-EGQPDFALRPPEPARWAWMPEQPYVVFFHGTARA 179 + + HAV R R + A +LGY + Q D+A+ PY VF H T R Sbjct: 132 HHIAKQQHAVERTRELFAKSLGYDKPQSQGDYAI-AKHFLHCQQAVSDPYAVFLHATTRD 190 Query: 180 AKQWPQAQWIKL 191 K WP+A W +L Sbjct: 191 DKHWPEANWREL 202 >YPO0056 [M] COG0859 ADP-heptose Ype Yersinia pestis Length = 321 Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 108/204 (52%), Gaps = 20/204 (9%) Query: 1 MPMVADIHRHFPAAQIDWVVEEGYTSLVGLNPHVRKIIPIALRRWRKTLFSAVTRAEIGA 60 +P + D P + DWVVEEG++ + +P V K+IP+A+RRWRK F + TR E Sbjct: 18 LPALTDAMNAIPGIRFDWVVEEGFSQIPSWHPAVDKVIPVAIRRWRKNWFGSDTRQERCD 77 Query: 61 FRRELQAERYDLVFDTQGLLKT-SVVMRMARLAPQGRRIGLANATEGSGYEPISRIFHDQ 119 F+R +Q YD V D QGL+K+ +++ R+A+ G S EP + F++ Sbjct: 78 FKRVVQQRSYDRVIDAQGLIKSAALITRIAKGTKHGPDC-------KSAREPFASWFYNC 130 Query: 120 SIPVDLRTHAVTRARLVAAAALGYQL-EGQPDFALRPPEPARWAWMPEQP-----YVVFF 173 +D + HAV R R + A +LGY E D+A+ ++ + P Y+VF Sbjct: 131 RHEIDTKQHAVERIRQLFAKSLGYDKPESYGDYAIAQ------RFLNQLPADAGQYLVFL 184 Query: 174 HGTARAAKQWPQAQWIKLGQALAP 197 H T R K WP++ W++L + + P Sbjct: 185 HATTRDNKHWPESHWVQLIELVQP 208