BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0097.p (252 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0675 [K] COG1678 Putative transcriptional regulator Rso Ralst... 249 5e-66 VC0467 [K] COG1678 Putative transcriptional regulator Vch Vibrio... 197 2e-50 NMB1336 [K] COG1678 Putative transcriptional regulator Nme Neiss... 185 7e-47 NMA1550 [K] COG1678 Putative transcriptional regulator NmA Neiss... 183 3e-46 PA0405 [K] COG1678 Putative transcriptional regulator Pae Pseudo... 179 4e-45 >RSc0675 [K] COG1678 Putative transcriptional regulator Rso Ralstonia solanacearum Length = 190 Score = 249 bits (635), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 123/195 (63%), Positives = 145/195 (74%), Gaps = 8/195 (4%) Query: 58 PPLELDLTNHFLIAMPSMLDPIFGGTVVYLCEHNHNGALGVVINKPTDMTMDVLFDRINL 117 P ++LTN FLIAMP M DP F GTVVYLCEHN GALG+VIN+P D+ + LFD+I+L Sbjct: 4 PDAPINLTNQFLIAMPGMADPTFSGTVVYLCEHNERGALGLVINRPIDIDLATLFDKIDL 63 Query: 118 KLEIRPDTPDAMPELYRRPVMFGGPVQVERGFVLHSTSEKYSSTLQVTDEVALTTSKDVL 177 KLEI P L +PV +GGPVQ ERGFVLH YSS+L V + +TTSKDVL Sbjct: 64 KLEIHP--------LAEQPVYYGGPVQTERGFVLHDAMGSYSSSLTVPGGLEMTTSKDVL 115 Query: 178 EAVAHGDGPERVLVTLGCSGWSPGQLEGEIGRNGWLTVKADPAIIFELPVEQRFTAALAL 237 EAVA G GP+R ++TLG +GWS GQLE EIGRNGWLTV+ADP IIF +P E+RF AAL L Sbjct: 116 EAVARGGGPQRFILTLGYAGWSAGQLEEEIGRNGWLTVQADPEIIFNVPAEERFAAALRL 175 Query: 238 LGIDPVMLSGDAGRA 252 LGI+P MLSG+AG A Sbjct: 176 LGINPAMLSGEAGHA 190 >VC0467 [K] COG1678 Putative transcriptional regulator Vch Vibrio cholerae Length = 200 Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 90/191 (47%), Positives = 130/191 (68%), Gaps = 4/191 (2%) Query: 62 LDLTNHFLIAMPSMLDPIFGGTVVYLCEHNHNGALGVVINKPTDMTMDVLFDRINLKLEI 121 ++LTNHFL+AMPSM DP F +V+Y+CEHN +GA+G++IN P D+T+ + ++ +I Sbjct: 14 MNLTNHFLVAMPSMKDPYFKRSVIYICEHNQDGAMGLMINAPIDITVGGMLKQV----DI 69 Query: 122 RPDTPDAMPELYRRPVMFGGPVQVERGFVLHSTSEKYSSTLQVTDEVALTTSKDVLEAVA 181 P P + E ++PV GGPV +RGF+LH + Y S++++TD++A+TTSKD+L + Sbjct: 70 EPAYPQSHQENLKKPVFNGGPVSEDRGFILHRPRDHYESSMKMTDDIAVTTSKDILTVLG 129 Query: 182 HGDGPERVLVTLGCSGWSPGQLEGEIGRNGWLTVKADPAIIFELPVEQRFTAALALLGID 241 PE +V LG SGWS GQLE E+ N WLT++ADP +IF PV +++ A+ LGI Sbjct: 130 TEAEPEGYIVALGYSGWSAGQLEVELTENSWLTIEADPELIFNTPVHEKWQKAIQKLGIS 189 Query: 242 PVMLSGDAGRA 252 P LS DAG A Sbjct: 190 PAQLSSDAGHA 200 >NMB1336 [K] COG1678 Putative transcriptional regulator Nme Neisseria meningitidis MC58 Length = 182 Score = 185 bits (470), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 87/191 (45%), Positives = 127/191 (66%), Gaps = 9/191 (4%) Query: 62 LDLTNHFLIAMPSMLDPIFGGTVVYLCEHNHNGALGVVINKPTDMTMDVLFDRINLKLEI 121 ++L+NHFLIAMP M D F +VVY+C+H+ +GALG+ INKP+ +TMD++F + + Sbjct: 1 MNLSNHFLIAMPDMEDAFFSQSVVYICKHDEDGALGIAINKPSPITMDMIFSATGKNIPM 60 Query: 122 RPDTPDAMPELYRRPVMFGGPVQVERGFVLHSTSEKYSSTLQVTDEVALTTSKDVLEAVA 181 R + VM GGPVQVERG+V+H+ + S++ V+D +ALT+S+DV+E ++ Sbjct: 61 R---------MQHDSVMMGGPVQVERGYVVHTPIGNWQSSIGVSDNIALTSSRDVIENIS 111 Query: 182 HGDGPERVLVTLGCSGWSPGQLEGEIGRNGWLTVKADPAIIFELPVEQRFTAALALLGID 241 ++ L+++G S WS GQLE E+ N WLTV AD I+F++P E R+ AA A LGID Sbjct: 112 REGAVDKALISIGYSSWSKGQLERELADNAWLTVPADEHILFDIPYEHRYAAAFAKLGID 171 Query: 242 PVMLSGDAGRA 252 P+ L AG A Sbjct: 172 PLALFSGAGHA 182 >NMA1550 [K] COG1678 Putative transcriptional regulator NmA Neisseria meningitidis Z2491 Length = 182 Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 85/191 (44%), Positives = 126/191 (65%), Gaps = 9/191 (4%) Query: 62 LDLTNHFLIAMPSMLDPIFGGTVVYLCEHNHNGALGVVINKPTDMTMDVLFDRINLKLEI 121 ++L+NHFL+AMP M D F +VVY+C+H+ +GALG+ INKP+ +TMD++F + Sbjct: 1 MNLSNHFLVAMPDMEDAFFSQSVVYICKHDEDGALGIAINKPSPITMDMIFSATGKNIPF 60 Query: 122 RPDTPDAMPELYRRPVMFGGPVQVERGFVLHSTSEKYSSTLQVTDEVALTTSKDVLEAVA 181 R + VM GGPVQVERG+V+H+ + S++ V+D +ALT+S+DV+E ++ Sbjct: 61 R---------MQHDSVMMGGPVQVERGYVVHTPIGNWQSSIGVSDNIALTSSRDVIENIS 111 Query: 182 HGDGPERVLVTLGCSGWSPGQLEGEIGRNGWLTVKADPAIIFELPVEQRFTAALALLGID 241 +++L+++G S W GQLE E+ N WLTV AD I+F++P E R+ AA A LGID Sbjct: 112 REGAVDKILISIGYSSWGKGQLERELADNAWLTVPADEHILFDIPYEHRYAAAFAKLGID 171 Query: 242 PVMLSGDAGRA 252 P+ L AG A Sbjct: 172 PLALFSGAGHA 182 >PA0405 [K] COG1678 Putative transcriptional regulator Pae Pseudomonas aeruginosa Length = 189 Score = 179 bits (455), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 91/191 (47%), Positives = 126/191 (65%), Gaps = 12/191 (6%) Query: 64 LTNHFLIAMPSMLDPIFGGTVVYLCEHNHNGALGVVINKPTDMTMDVLFDRINLKLEIRP 123 L +HFLIAMP M DP F TV YL EHN GA+G+VIN+P+ + + + +++ Sbjct: 9 LKHHFLIAMPHMADPNFAQTVTYLVEHNEQGAMGLVINRPSGLNLAEVLEQLK------- 61 Query: 124 DTPDAMP--ELYRRPVMFGGPVQVERGFVLHSTSEKYSSTLQVTDEVALTTSKDVLEAVA 181 PDA+P + GGPVQ +RGFVLH + Y STL++ E+A++TS+DVL A+A Sbjct: 62 --PDALPPARCQHIDIYNGGPVQTDRGFVLHPSGLSYQSTLEL-GELAMSTSQDVLFAIA 118 Query: 182 HGDGPERVLVTLGCSGWSPGQLEGEIGRNGWLTVKADPAIIFELPVEQRFTAALALLGID 241 G GPE+ L++LG +GW GQLE E+ N WLT ADPAI+F+LP E+R +AA A LG++ Sbjct: 119 AGTGPEKSLISLGYAGWEAGQLEAELSDNAWLTCPADPAILFDLPPEERLSAAAARLGVN 178 Query: 242 PVMLSGDAGRA 252 +L+ AG A Sbjct: 179 LSLLTAQAGHA 189