BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0096.p         (100 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0142 [FR] COG0402 Cytosine deaminase and related metal-depende...    59   3e-09

>PA0142 [FR] COG0402 Cytosine deaminase and related metal-dependent
           hydrolases Pae Pseudomonas aeruginosa
          Length = 449

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 7   WGTTGGARVLGLDGLQGLQVGQQADIALYRLDDPRYFGLHDPAIGPVASGGRPFLKAMWV 66
           W T G AR+LG   +  L  G+QAD+AL++LD+ R+ G HDP    +        + M V
Sbjct: 358 WATRGSARLLGRSDIGELAPGKQADLALFKLDELRFSGSHDPLSALLLCAADRADRVM-V 416

Query: 67  GGRAVVRDDAIPGVDLAELGAQARQAVKKMLEG 99
           GG   V D A+ G+DLA L A+ R A   ++ G
Sbjct: 417 GGAWRVVDGAVEGLDLAALIARHRAAASALIAG 449