BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0068.p (271 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2142 [G] COG0395 ABC-type sugar transport system, permease co... 407 e-113 PA2340 [G] COG0395 ABC-type sugar transport system, permease com... 335 7e-92 SMc01498 [G] COG0395 ABC-type sugar transport system, permease c... 331 1e-90 AGl835 [G] COG0395 ABC-type sugar transport system, permease com... 315 5e-86 mll4924 [G] COG0395 ABC-type sugar transport system, permease co... 315 9e-86 >RSc2142 [G] COG0395 ABC-type sugar transport system, permease component Rso Ralstonia solanacearum Length = 286 Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust. Identities = 196/260 (75%), Positives = 232/260 (89%) Query: 12 AVLGWACAIVLFFPIFWVAVTAFKTESQAYTPSLIFLPTLDTFREVFSRSHYLGYVQNSL 71 VL W A+ LFFPIFW+A+TAFKTE QAY SL F+PTLD+FREVF+RS+Y + NS+ Sbjct: 27 GVLAWLIALALFFPIFWMAITAFKTEQQAYEASLFFVPTLDSFREVFARSNYFAFAWNSV 86 Query: 72 IVSLGSTLLSLLLAVPAAYSMAFFPTGRTQKLLLWMLSTKMMPAVGVLIPIYLLAKNTGL 131 ++S G T++ L LAVPAAY+MAFFP RTQK+LLWMLSTKMMP+VGVL+PIYLL KN GL Sbjct: 87 LISAGVTVICLALAVPAAYAMAFFPNRRTQKVLLWMLSTKMMPSVGVLVPIYLLWKNAGL 146 Query: 132 LDTVTGLTIIYTLINLPIAVWMAFTYFNDVPKEILEAARIDGANAWQEMIYLLLPTAMPG 191 LDTV+GL I+Y LINLPIAVWMAFTYFN++PK+ILE+ RIDGA+ WQE++YLL+P A+PG Sbjct: 147 LDTVSGLVIVYALINLPIAVWMAFTYFNEIPKDILESGRIDGASTWQEIVYLLMPMALPG 206 Query: 192 LASTALLLIILSWNEAFWSLNLTSVNAAPLTVFIASYSNPEGLFWAKLSAASLLAIAPIM 251 LASTALLL+ILSWNEAFWS+NL+S NAAPLTVFIASYS+PEGLFWAKLSAASLLA+API+ Sbjct: 207 LASTALLLVILSWNEAFWSINLSSSNAAPLTVFIASYSSPEGLFWAKLSAASLLAVAPIL 266 Query: 252 ALGWLAQKQLVRGLTFGAVK 271 +GWL+QKQLVRGLTFGAVK Sbjct: 267 VVGWLSQKQLVRGLTFGAVK 286 >PA2340 [G] COG0395 ABC-type sugar transport system, permease component Pae Pseudomonas aeruginosa Length = 277 Score = 335 bits (859), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 167/263 (63%), Positives = 204/263 (77%), Gaps = 2/263 (0%) Query: 11 VAVLGWACAIVLFFPIFWVAVTAFKTESQAYT--PSLIFLPTLDTFREVFSRSHYLGYVQ 68 + +L W A++LFFPIFW+ +T+FK+E A+ P IF PTL+ + + RS Y Y Sbjct: 15 LGLLCWGIALLLFFPIFWMLLTSFKSEIDAFATPPQFIFQPTLENYLHINERSDYFAYAW 74 Query: 69 NSLIVSLGSTLLSLLLAVPAAYSMAFFPTGRTQKLLLWMLSTKMMPAVGVLIPIYLLAKN 128 NSL++S +TLL +L+AVPAAYSMAFF T T++ LLWMLSTKM+P VGVL+PIYLLAK Sbjct: 75 NSLLISSSATLLCMLVAVPAAYSMAFFETRHTKRTLLWMLSTKMLPPVGVLMPIYLLAKQ 134 Query: 129 TGLLDTVTGLTIIYTLINLPIAVWMAFTYFNDVPKEILEAARIDGANAWQEMIYLLLPTA 188 GLLD+ L I+YTLINLPI VWM +TYF D+P +ILEAAR+DGA WQE++ +LLP A Sbjct: 135 FGLLDSRLALIIVYTLINLPIVVWMVYTYFKDIPVDILEAARLDGAGTWQEIVRVLLPIA 194 Query: 189 MPGLASTALLLIILSWNEAFWSLNLTSVNAAPLTVFIASYSNPEGLFWAKLSAASLLAIA 248 GLAST LL +IL WNEAFWSLNLTS AAPLT +ASYS+PEGLFWAKLSA S LA A Sbjct: 195 RGGLASTLLLSLILCWNEAFWSLNLTSSAAAPLTALVASYSSPEGLFWAKLSAVSTLACA 254 Query: 249 PIMALGWLAQKQLVRGLTFGAVK 271 PI+ GW++QKQLVRGL+FGAVK Sbjct: 255 PILVFGWISQKQLVRGLSFGAVK 277 >SMc01498 [G] COG0395 ABC-type sugar transport system, permease component Sme Sinorhizobium meliloti Length = 276 Score = 331 bits (848), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 166/262 (63%), Positives = 211/262 (80%), Gaps = 3/262 (1%) Query: 13 VLGWACAIVLFFPIFWVAVTAFKTESQAYTPSLIFLP---TLDTFREVFSRSHYLGYVQN 69 V+ W I++FFPI W +T+FKTE+QA +FL T + + EV SRS YL + N Sbjct: 15 VVAWTIGILIFFPILWTFLTSFKTEAQAIASPPVFLFFDWTTENYSEVQSRSDYLKHFMN 74 Query: 70 SLIVSLGSTLLSLLLAVPAAYSMAFFPTGRTQKLLLWMLSTKMMPAVGVLIPIYLLAKNT 129 S++VS GSTLL LL+A+P+A++MAF PT RT+ +L+WMLSTKMMP VGVL+P+YL+ +N Sbjct: 75 SVVVSFGSTLLGLLIAIPSAWAMAFSPTKRTKDVLMWMLSTKMMPPVGVLVPMYLIFRNW 134 Query: 130 GLLDTVTGLTIIYTLINLPIAVWMAFTYFNDVPKEILEAARIDGANAWQEMIYLLLPTAM 189 GLLDT TGL I+ TLINLPI +WM +TYF ++P EILEAAR+DGA+ +E+IY+L P A+ Sbjct: 135 GLLDTRTGLVIVLTLINLPIIIWMLYTYFKEIPGEILEAARMDGASLTKEIIYVLTPMAI 194 Query: 190 PGLASTALLLIILSWNEAFWSLNLTSVNAAPLTVFIASYSNPEGLFWAKLSAASLLAIAP 249 PG+AST LL IIL+WNEAFW+LNL++ AAPLT FIASYS+PEGLF+AKLSAAS +AIAP Sbjct: 195 PGIASTLLLNIILAWNEAFWTLNLSAAKAAPLTAFIASYSSPEGLFYAKLSAASTMAIAP 254 Query: 250 IMALGWLAQKQLVRGLTFGAVK 271 I+ LGW +QKQLVRGLTFGAVK Sbjct: 255 ILILGWFSQKQLVRGLTFGAVK 276 >AGl835 [G] COG0395 ABC-type sugar transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 274 Score = 315 bits (808), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 153/267 (57%), Positives = 211/267 (79%), Gaps = 1/267 (0%) Query: 6 KSPLWVAVLGWACAIVLFFPIFWVAVTAFKTESQAYTP-SLIFLPTLDTFREVFSRSHYL 64 ++ + + WA A++LFFPI + +T+ KTE +A SLI TL+ + V ++ Y Sbjct: 8 RAKIGFTIAAWAVALLLFFPILYAFLTSIKTEPEAIAGFSLIPSGTLENYITVQTQRDYF 67 Query: 65 GYVQNSLIVSLGSTLLSLLLAVPAAYSMAFFPTGRTQKLLLWMLSTKMMPAVGVLIPIYL 124 NS+++SLGST+++L++A+PAA++MAF PT RT+ +L+WMLSTKMMP V VL+PIYL Sbjct: 68 KPFMNSVVLSLGSTIIALMIAIPAAWAMAFSPTKRTKDILMWMLSTKMMPGVAVLVPIYL 127 Query: 125 LAKNTGLLDTVTGLTIIYTLINLPIAVWMAFTYFNDVPKEILEAARIDGANAWQEMIYLL 184 + +N GLLDT GLT++ T INLPI VWM +TYF ++P EILEAAR+DGA+ W E++++L Sbjct: 128 IFRNAGLLDTRIGLTVMLTFINLPIVVWMLYTYFREIPGEILEAARMDGASLWNEIVHVL 187 Query: 185 LPTAMPGLASTALLLIILSWNEAFWSLNLTSVNAAPLTVFIASYSNPEGLFWAKLSAASL 244 P A+PG+AST LL +IL+WNE+FW++ LT+ NAAPLT FIAS+S+P+GLFWAKLSAAS+ Sbjct: 188 TPMAVPGIASTLLLNVILAWNESFWTIRLTTTNAAPLTAFIASFSSPQGLFWAKLSAASM 247 Query: 245 LAIAPIMALGWLAQKQLVRGLTFGAVK 271 +AIAPI+ +GW +QKQLVRGLTFGAVK Sbjct: 248 MAIAPILVIGWFSQKQLVRGLTFGAVK 274 >mll4924 [G] COG0395 ABC-type sugar transport system, permease component Mlo Mesorhizobium loti Length = 274 Score = 315 bits (806), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 155/260 (59%), Positives = 208/260 (80%), Gaps = 1/260 (0%) Query: 13 VLGWACAIVLFFPIFWVAVTAFKTESQAYTP-SLIFLPTLDTFREVFSRSHYLGYVQNSL 71 V W A+++FFPI + +T+FK+E +A +LI T +++ EV ++S Y + NS+ Sbjct: 15 VAAWIVALLIFFPILYTIITSFKSEQEAIQGFNLIPSGTFESYSEVQAQSGYFKFFFNSV 74 Query: 72 IVSLGSTLLSLLLAVPAAYSMAFFPTGRTQKLLLWMLSTKMMPAVGVLIPIYLLAKNTGL 131 ++S+GST+L+LL+A+PAA+SMAF PT RT+ +L+WMLSTKMMPAV VL PIYL+ ++ GL Sbjct: 75 LLSVGSTILALLVAIPAAWSMAFSPTKRTKDILMWMLSTKMMPAVAVLFPIYLIFRDFGL 134 Query: 132 LDTVTGLTIIYTLINLPIAVWMAFTYFNDVPKEILEAARIDGANAWQEMIYLLLPTAMPG 191 LD+ GL ++ LINLPI VWM +TYF ++P EILEAAR+DGA+ W E+IY+L P A+PG Sbjct: 135 LDSRIGLMVMLMLINLPIVVWMLYTYFREIPGEILEAARMDGASLWNEIIYVLTPMAVPG 194 Query: 192 LASTALLLIILSWNEAFWSLNLTSVNAAPLTVFIASYSNPEGLFWAKLSAASLLAIAPIM 251 +AST LL IIL+WNEAFW++ LT+ AAPLT FI+S+S+P+GLFWAKLSAAS LAIAPI+ Sbjct: 195 IASTMLLNIILAWNEAFWTIRLTTTEAAPLTAFISSFSSPQGLFWAKLSAASTLAIAPIL 254 Query: 252 ALGWLAQKQLVRGLTFGAVK 271 +GW +QKQLVRGLTFGAVK Sbjct: 255 IMGWFSQKQLVRGLTFGAVK 274