BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0067.p (310 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2143 [G] COG1175 ABC-type sugar transport systems, permease c... 416 e-116 SMc01497 [G] COG1175 ABC-type sugar transport systems, permease ... 364 e-100 PA2339 [G] COG1175 ABC-type sugar transport systems, permease co... 353 3e-97 AGl839 [G] COG1175 ABC-type sugar transport systems, permease co... 347 2e-95 AGl3284 [G] COG1175 ABC-type sugar transport systems, permease c... 347 2e-95 >RSc2143 [G] COG1175 ABC-type sugar transport systems, permease components Rso Ralstonia solanacearum Length = 317 Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust. Identities = 200/307 (65%), Positives = 249/307 (81%) Query: 4 SSSQPAARKQQTSPPRKERFNPIRLMQTPSVLILLAWMIVPLVMTIYFSVNRYNLMAPDQ 63 S S A + SP R + + +PSV LL WM +PL MTI+FS +RYNL+ PD Sbjct: 11 SFSHTTAVGKPASPSAPRRRDGASWLVSPSVAALLLWMSIPLAMTIWFSFSRYNLLNPDV 70 Query: 64 TGFVGLENYIFLLQDPAFWPSIGNTALLIGSVLAISVIGGTLLAVLFDQPFRGRGIARLL 123 GF G +NY FL DP+F P+I +T LIG+VL I+V+GG L AVLFD+ F G+GIARLL Sbjct: 71 KGFAGFDNYHFLATDPSFGPAIWHTLALIGAVLVITVVGGVLTAVLFDRKFYGQGIARLL 130 Query: 124 VIGPFFVMPTVAALIWKNMIMHPVYGILAYVMRHLGLEPIDWLAEYPMLSVIIIVAWQWI 183 +I PFFVMPTV+ALIWKNMI+HPVYG++A MR +GL PIDW A+YP+ +V+IIVAWQW+ Sbjct: 131 MIAPFFVMPTVSALIWKNMILHPVYGLVASAMRAVGLTPIDWFADYPLTAVVIIVAWQWL 190 Query: 184 PFAFLILLTALQSLDTDQKEAAQLDGAGPVRIFFYIVLPHLKRAITVVIMIETIFLLSVF 243 PFAFLIL TA+QSLD +QKEAA++DGAGP+ +FFYI LPHLKRAI VV+M+ETIFLLS+F Sbjct: 191 PFAFLILFTAIQSLDQEQKEAARIDGAGPIAMFFYITLPHLKRAIAVVVMMETIFLLSIF 250 Query: 244 AEIFTTTAGGPGTATTNLTFLVYSIGLQQFDIGIASAGGIFAVVLANIVSFFLVRMLARN 303 AEI+TTT GGPG ATTNL++L+Y++GLQQFD+G+ASAGGI AVV+ANIVSFFLVRMLA+N Sbjct: 251 AEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASAGGILAVVVANIVSFFLVRMLAKN 310 Query: 304 LKGVNEK 310 LKG ++ Sbjct: 311 LKGEYQQ 317 >SMc01497 [G] COG1175 ABC-type sugar transport systems, permease components Sme Sinorhizobium meliloti Length = 290 Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust. Identities = 183/280 (65%), Positives = 224/280 (80%) Query: 27 RLMQTPSVLILLAWMIVPLVMTIYFSVNRYNLMAPDQTGFVGLENYIFLLQDPAFWPSIG 86 RLM PSVL+LLAWMIVPL MTIYFS+ RYNL+ P F GL NY + L DPAF+ +I Sbjct: 11 RLMIAPSVLLLLAWMIVPLAMTIYFSLLRYNLLMPGMEEFAGLTNYTYFLTDPAFFQAIF 70 Query: 87 NTALLIGSVLAISVIGGTLLAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHP 146 NT ++ VL I+V+GG LA+L DQP G+GI R+LVI PF +MPTVAAL+WKNM M+P Sbjct: 71 NTLAIVLGVLFITVVGGIGLALLLDQPMFGQGIVRILVIAPFLIMPTVAALVWKNMFMNP 130 Query: 147 VYGILAYVMRHLGLEPIDWLAEYPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQKEAAQ 206 V G+ A++ + LGL+P D+LA P+LS+I+IVAWQW+PFA LILLTALQSLD +QKEAAQ Sbjct: 131 VNGLFAWLAKLLGLQPFDFLANAPLLSIILIVAWQWLPFATLILLTALQSLDEEQKEAAQ 190 Query: 207 LDGAGPVRIFFYIVLPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTATTNLTFLVY 266 +DGAG V F Y+VLPHL RAIT+VI+I+TIFLLSVFAEI TT GGPGT +TNLTFLVY Sbjct: 191 MDGAGAVSRFIYLVLPHLSRAITMVILIQTIFLLSVFAEILVTTNGGPGTQSTNLTFLVY 250 Query: 267 SIGLQQFDIGIASAGGIFAVVLANIVSFFLVRMLARNLKG 306 + L QFD+G ASAGGI AV+LANIV+FFL+RM+ + L+ Sbjct: 251 AQALLQFDVGGASAGGIIAVILANIVAFFLMRMIGKTLEA 290 >PA2339 [G] COG1175 ABC-type sugar transport systems, permease components Pae Pseudomonas aeruginosa Length = 310 Score = 353 bits (906), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 176/283 (62%), Positives = 222/283 (78%), Gaps = 1/283 (0%) Query: 24 NPIRLMQTPSVLILLAWMIVPLVMTIYFSVNRYNLMAPDQTGFVGLENYIFLLQDPAFWP 83 P L+ +PSV +LL WMIVPL MT+YFS+ RYNL+ P + FVGLEN+ F + D F P Sbjct: 25 GPGWLLVSPSVALLLLWMIVPLGMTLYFSLIRYNLLYPGENAFVGLENFTFFVTDAGFLP 84 Query: 84 SIGNTALLIGSVLAISVIGGTLLAVLFDQ-PFRGRGIARLLVIGPFFVMPTVAALIWKNM 142 NT LL+GSVLAISV G L+A L + F GRG R+L+I PFF+MPTV+AL+WKN+ Sbjct: 85 GALNTLLLVGSVLAISVAFGVLIAALLEAGEFFGRGAVRVLLISPFFIMPTVSALLWKNL 144 Query: 143 IMHPVYGILAYVMRHLGLEPIDWLAEYPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQK 202 I HPV GILA V R G EP+DWLA YP+LS+I+IV+WQW+PFA LIL+TA+QSLD +QK Sbjct: 145 IFHPVSGILAAVWRLFGAEPVDWLAHYPLLSIILIVSWQWLPFAILILMTAMQSLDQEQK 204 Query: 203 EAAQLDGAGPVRIFFYIVLPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTATTNLT 262 EAA+LDGAGP+ IF+++ LPHL R I VV+MIETIFLLSVFAEIFTTT+GGPG +TNL Sbjct: 205 EAARLDGAGPLAIFWHLTLPHLARPIAVVLMIETIFLLSVFAEIFTTTSGGPGYESTNLA 264 Query: 263 FLVYSIGLQQFDIGIASAGGIFAVVLANIVSFFLVRMLARNLK 305 +L+Y+ L QFD+G+ASAGG+ AV++ANI + LVRM+ +NL Sbjct: 265 YLIYNQALLQFDVGMASAGGLIAVLIANIAAIVLVRMIGKNLT 307 >AGl839 [G] COG1175 ABC-type sugar transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 306 Score = 347 bits (891), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 172/296 (58%), Positives = 219/296 (73%) Query: 10 ARKQQTSPPRKERFNPIRLMQTPSVLILLAWMIVPLVMTIYFSVNRYNLMAPDQTGFVGL 69 A + ++ + R+M PSVL+LL WMIVPL MT++FS YNL+ P F GL Sbjct: 10 AHGEVSAMATRNTSGLARVMLAPSVLLLLVWMIVPLAMTLWFSFQNYNLLNPANVSFAGL 69 Query: 70 ENYIFLLQDPAFWPSIGNTALLIGSVLAISVIGGTLLAVLFDQPFRGRGIARLLVIGPFF 129 NY + DPAF+ SI NT L++G VL I+V+GG +A+L D G+GI R+++I PFF Sbjct: 70 FNYQYFYTDPAFFQSIWNTLLIVGGVLVITVVGGIAIALLLDNDIFGQGIVRIMIISPFF 129 Query: 130 VMPTVAALIWKNMIMHPVYGILAYVMRHLGLEPIDWLAEYPMLSVIIIVAWQWIPFAFLI 189 VMP VAAL+WKNMIMHP YG+LA + R GL+P+DW A++P+LS+IIIVAWQW+PFA LI Sbjct: 130 VMPPVAALVWKNMIMHPGYGVLADLSRFFGLQPVDWFAQFPLLSIIIIVAWQWLPFATLI 189 Query: 190 LLTALQSLDTDQKEAAQLDGAGPVRIFFYIVLPHLKRAITVVIMIETIFLLSVFAEIFTT 249 LLTALQSLD +QKEAA++DGA + F Y+ LPHL RAITVVI+I+TIFLL V+AEI T Sbjct: 190 LLTALQSLDGEQKEAAEMDGANFINRFIYLTLPHLARAITVVILIQTIFLLGVYAEILVT 249 Query: 250 TAGGPGTATTNLTFLVYSIGLQQFDIGIASAGGIFAVVLANIVSFFLVRMLARNLK 305 T GGPG A+TNL FL+Y L +D+G ASAGGI AVVLANIV+ FL+R + +NL Sbjct: 250 TNGGPGYASTNLAFLIYRTALLGYDVGGASAGGIIAVVLANIVAIFLMRAVGKNLD 305 >AGl3284 [G] COG1175 ABC-type sugar transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 290 Score = 347 bits (890), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 172/279 (61%), Positives = 214/279 (76%) Query: 27 RLMQTPSVLILLAWMIVPLVMTIYFSVNRYNLMAPDQTGFVGLENYIFLLQDPAFWPSIG 86 R+M PSVL+LL WMIVPL MT++FS YNL+ P F GL NY + DPAF+ SI Sbjct: 11 RVMLAPSVLLLLVWMIVPLAMTLWFSFQNYNLLNPANVSFAGLFNYQYFYTDPAFFQSIW 70 Query: 87 NTALLIGSVLAISVIGGTLLAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHP 146 NT L++G VL I+V+GG +A+L D G+GI R+++I PFFVMP VAAL+WKNMIMHP Sbjct: 71 NTLLIVGGVLLITVVGGIAIALLLDNDIFGQGIVRIMIISPFFVMPPVAALVWKNMIMHP 130 Query: 147 VYGILAYVMRHLGLEPIDWLAEYPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQKEAAQ 206 YG+LA + R GL+P+DW A++P+LS+IIIVAWQW+PFA LILLTALQSLD +QKEAA+ Sbjct: 131 GYGVLADLSRFFGLQPVDWFAQFPLLSIIIIVAWQWLPFATLILLTALQSLDGEQKEAAE 190 Query: 207 LDGAGPVRIFFYIVLPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTATTNLTFLVY 266 +DGA V F Y+ LPHL RAITVVI+I+TIFLL V+AEI TT GGPG A+TNL FL+Y Sbjct: 191 MDGANFVNRFIYLTLPHLARAITVVILIQTIFLLGVYAEILVTTNGGPGYASTNLAFLIY 250 Query: 267 SIGLQQFDIGIASAGGIFAVVLANIVSFFLVRMLARNLK 305 L +D+G ASAGGI AVVLANIV+ FL+R + +NL Sbjct: 251 RTALLGYDVGGASAGGIIAVVLANIVAIFLMRAVGKNLD 289