BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0059.p         (189 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0197 [E] COG1605 Chorismate mutase Rso Ralstonia solanacearum       64   1e-10
XF1141 [E] COG1605 Chorismate mutase Xfa Xylella fastidiosa 9a5c       60   2e-09

>RSp0197 [E] COG1605 Chorismate mutase Rso Ralstonia solanacearum
          Length = 155

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 66/147 (44%), Gaps = 18/147 (12%)

Query: 45  RLDVAAPVARSKWNSHAPIDDPAREAVILDDVAARAQKLGLDAAWTRRFFQDQFEAGKIV 104
           RL  A  VA SKW++   + DP REA ++ +V+ +A   GL A      F DQ EA K V
Sbjct: 7   RLTTADQVALSKWDTGQSVYDPEREAKVIANVSGQAPAYGLTAEEVASVFADQMEANKTV 66

Query: 105 QRDLHRQWRVEQRPPFANPPDLALQVRPVLDRLTPDLLAALARLNGHWCEPAVQRDLAEL 164
           Q  L   WR +   P A    L   +RP LD L   +LA L             RD A L
Sbjct: 67  QYALLNGWRRDGAAPSAPRQSLRDVIRPRLDTLQASILAGL-------------RDTASL 113

Query: 165 --APEI---LGADYAPAVRERATDALH 186
             AP+             RER+ DALH
Sbjct: 114 RRAPDCQAQAAIAAGQVARERSLDALH 140


>XF1141 [E] COG1605 Chorismate mutase Xfa Xylella fastidiosa 9a5c
          Length = 191

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 1/123 (0%)

Query: 25  TTPPPAARSDVEQLLTLQKTRLDVAAPVARSKWNSHAPIDDPAREAVILDDVAARAQKLG 84
           T    +A S +  LL     R  +   VA SKW++  P+ D +RE  +L  V  +A +  
Sbjct: 26  TDQAHSAPSTLTTLLGKVAERNAIGDEVALSKWDTGKPVLDASRETAVLQSVRDQAPQYR 85

Query: 85  LDAAWTRRFFQDQFEAGKIVQRDLHRQWRVEQRPPFANPPDLALQVRPVLDRLTPDLLAA 144
           LD     RFF  Q E+ K+VQ  L  +W++  + P    P+L + +R  LD L  +LL A
Sbjct: 86  LDPDLAARFFSAQIESNKLVQYQLLNRWQLRGKAPNRTRPNL-IALRDRLDHLQNELLDA 144

Query: 145 LAR 147
           LA+
Sbjct: 145 LAQ 147