BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0050.p         (545 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC2213 [M] COG2885 Outer membrane protein and related peptidogly...    81   5e-15
PA1041 [M] COG2885 Outer membrane protein and related peptidogly...    73   2e-12
PA0833 [M] COG2885 Outer membrane protein and related peptidogly...    71   5e-12
RSp0761 [M] COG2885 Outer membrane protein and related peptidogl...    70   9e-12
FN1265 [M] COG2885 Outer membrane protein and related peptidogly...    70   1e-11

>VC2213 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Vch Vibrio
           cholerae
          Length = 321

 Score = 81.3 bits (199), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 65/97 (67%), Gaps = 5/97 (5%)

Query: 182 SAAEIQDSNLRKQ-----YLEKMAQRKLLLVGHTDDTGSSRLNADLSERRARAVSRFMQE 236
           ++AE++ + ++K      YL +  Q K+ +VGHTD TGS   N  LSERRA+AV++ ++ 
Sbjct: 215 ASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDSTGSEAYNQKLSERRAQAVAKALEA 274

Query: 237 HGVPAASLYFQGAGEFYPIASNDTEDGRSRNRRVEIV 273
            G+ A+ +  +G GE  PIASN T +GR +NRRVE+V
Sbjct: 275 QGIDASRISAKGLGESSPIASNATAEGREKNRRVELV 311


>PA1041 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Pae Pseudomonas
           aeruginosa
          Length = 210

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 200 AQRKLLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVPAASLY-FQGAGEFYPIASN 258
           A  +L + GHTD  GS   N  LSERRA AV+ ++ + GVP++ +   QG GE  P+A N
Sbjct: 132 ASTRLSITGHTDSVGSDAYNQKLSERRANAVANYLIDAGVPSSIIVGVQGLGESQPVADN 191

Query: 259 DTEDGRSRNRRVEIV 273
            T +GR+ NRRVEI+
Sbjct: 192 KTREGRAENRRVEIL 206


>PA0833 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Pae Pseudomonas
           aeruginosa
          Length = 237

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 51/77 (66%)

Query: 196 LEKMAQRKLLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVPAASLYFQGAGEFYPI 255
            ++  Q  + +VG+TD TGS + N DLS+RRA++V+ ++   GV    L  +G G   PI
Sbjct: 143 FKQYNQNTIEIVGYTDSTGSRQHNMDLSQRRAQSVAGYLTAQGVDGTRLSTRGMGPDQPI 202

Query: 256 ASNDTEDGRSRNRRVEI 272
           ASN T DGR++NRRVE+
Sbjct: 203 ASNSTADGRAQNRRVEV 219


>RSp0761 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Rso Ralstonia
           solanacearum
          Length = 277

 Score = 70.5 bits (171), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 19/118 (16%)

Query: 154 HFESNSDQLTARARDYFTAIAATYDIRKSAAEIQDSNLRKQYLEKMAQRKLLLVGHTDDT 213
            FE+ S  LT + R     +AA                    L ++  RK+ +VGHTD++
Sbjct: 174 EFETGSATLTPKGRGILDEMAAV-------------------LPRLNGRKIEIVGHTDNS 214

Query: 214 GSSRLNADLSERRARAVSRFMQEHGVPAASLYFQGAGEFYPIASNDTEDGRSRNRRVE 271
           GS  +N +LS+ RA  V  ++   G    +L   G G   P+A N T++GRSRNRR+E
Sbjct: 215 GSRAMNLNLSQARAETVKNYLISKGAEPGTLTAIGVGPDQPVAPNATDEGRSRNRRIE 272


>FN1265 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Fnu
           Fusobacterium nucleatum
          Length = 202

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 43/202 (21%)

Query: 71  VGGDNKGLLVGAALGGVIGGLIGNDMDKRRCELSKIAKQYQLDLQITALDNKGEAITTTD 130
           +G D KG L+GAA+G ++G   G   D +  EL       +  LQ T             
Sbjct: 38  IGKDTKGTLIGAAVGSLLGMGWGAYRDNQEREL-------KAKLQGT------------- 77

Query: 131 SAKAKQETAGSVVEVRDPAGAGGHFESNSDQLTARARDYFTAIAATYDIRKSAAEIQDSN 190
             +A+    G+ + +  P G    F S+S  +T+        IA                
Sbjct: 78  --QAQVRKDGNALVINLPGGV--TFASDSANITSGFYSALNGIA---------------- 117

Query: 191 LRKQYLEKMAQRKLLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVPAASLYFQGAG 250
              Q L    + ++ + G+TD+TG    N +LS+RRA AV++++   GV +  +   G G
Sbjct: 118 ---QSLNNYPETRIQVNGYTDNTGKDAHNQELSQRRANAVAQYLIAQGVSSNRIVANGFG 174

Query: 251 EFYPIASNDTEDGRSRNRRVEI 272
              PIASN T +GR +NRRVEI
Sbjct: 175 SSNPIASNSTPEGRLQNRRVEI 196