BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0111.p (337 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO3350 [G] COG2376 Dihydroxyacetone kinase Ype Yersinia pestis 395 e-110 BMEI0396 [G] COG2376 Dihydroxyacetone kinase Bme Brucella melite... 353 4e-97 SMb20314 [G] COG2376 Dihydroxyacetone kinase Sme Sinorhizobium m... 343 4e-94 mll7280 Non COG 297 2e-80 SMb20312_2 [G] COG2376 Dihydroxyacetone kinase Sme Sinorhizobium... 261 2e-69 >YPO3350 [G] COG2376 Dihydroxyacetone kinase Ype Yersinia pestis Length = 333 Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust. Identities = 201/331 (60%), Positives = 257/331 (77%) Query: 3 LNRIVNNPDLVVEDMLRGVLAAHPGLSAHPDNPRVLRHRSAGTPGRVGIVTGGGSGHEPA 62 +NRI+N+PD VVE+ ++G LAA+P A + +VL++ G+VG+VTGGGSGHEPA Sbjct: 1 MNRIINDPDQVVEEAIKGYLAAYPHFFAKTAHEKVLKYPEIPLQGKVGVVTGGGSGHEPA 60 Query: 63 FLGYVGQGLVDAVAVGEVFSSPTAKSFMDAFQLAHGGQGIACLYGNYAGDNMNVKMAIKL 122 FLGY+G+ ++DAVAVGE+FSSP A +F++AF++A GG G+ACLYGNYAGDNMNVKMA K Sbjct: 61 FLGYIGKNMLDAVAVGEIFSSPAAGAFLEAFKVADGGAGVACLYGNYAGDNMNVKMAAKK 120 Query: 123 AERADIQVRTVVANDDAASAPPDQPGKRRGVAGEILMWKAGGAVAAQGGTLDEVIQAAQK 182 AE I+VRTVVANDD ASAPP + KRRGVAGEI MWK G A A+QG LD VI+ AQK Sbjct: 121 AEAMGIRVRTVVANDDVASAPPSEREKRRGVAGEIFMWKVGAAAASQGYALDNVIEVAQK 180 Query: 183 AIDNTRSIGIGLSACTIPAVGKANFTIRHGEMEVGIGHHGEPGVSVQAVVPARDMARLML 242 AID+ RSIG+GL++CTIPAVGK NF+I G MEVGIGHHGEPG+ V+++ A MA+ M+ Sbjct: 181 AIDHCRSIGVGLTSCTIPAVGKPNFSIEDGMMEVGIGHHGEPGIRVESLQNAHQMAKTMV 240 Query: 243 DKLLPDLPFTRGDKVAVLLSGLGATPLMEQYILYADVADGLREAGLQVAHSFVGNLFTSL 302 D ++ D PF++GD+VAVL+SGLGATP +E YI YA+VA L G+ + ++GN FTSL Sbjct: 241 DLVVADRPFSQGDEVAVLISGLGATPTIELYIYYAEVAKLLEAQGITIYRPYIGNYFTSL 300 Query: 303 EMMGVTLTLMRLDAQLDQCLAAPCDSIGLRQ 333 +MMGVTLTLM+LD +L + P S+GL Q Sbjct: 301 DMMGVTLTLMKLDDELKSLIDVPTHSLGLTQ 331 >BMEI0396 [G] COG2376 Dihydroxyacetone kinase Bme Brucella melitensis Length = 342 Score = 353 bits (905), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 191/321 (59%), Positives = 234/321 (72%) Query: 2 TLNRIVNNPDLVVEDMLRGVLAAHPGLSAHPDNPRVLRHRSAGTPGRVGIVTGGGSGHEP 61 T+ R +NNPD VVED +RG + AH + +NPRV+ + A G+VG+VTGGGSGHEP Sbjct: 12 TMQRFINNPDEVVEDTVRGFVKAHSDIIRLAENPRVIAAKDAPVAGKVGVVTGGGSGHEP 71 Query: 62 AFLGYVGQGLVDAVAVGEVFSSPTAKSFMDAFQLAHGGQGIACLYGNYAGDNMNVKMAIK 121 AF+GY G+ ++DAVAVGE+FSSPTAKSF DA + A+GG+G+ LYGNYAGDNMNVKMA K Sbjct: 72 AFIGYTGKNMLDAVAVGELFSSPTAKSFHDAIREANGGKGVVVLYGNYAGDNMNVKMATK 131 Query: 122 LAERADIQVRTVVANDDAASAPPDQPGKRRGVAGEILMWKAGGAVAAQGGTLDEVIQAAQ 181 LA + I V TVVANDD SAP + KRRGVAGEI MWK GGA AA G TL+EV AQ Sbjct: 132 LAAKDGIDVATVVANDDVCSAPAAEREKRRGVAGEIFMWKVGGAKAATGATLEEVRATAQ 191 Query: 182 KAIDNTRSIGIGLSACTIPAVGKANFTIRHGEMEVGIGHHGEPGVSVQAVVPARDMARLM 241 KAIDN RSIG+GL CT+PAVG NF I G MEVGIGHHGEPGV V+ + A ++AR M Sbjct: 192 KAIDNCRSIGVGLGPCTLPAVGHPNFEIAPGTMEVGIGHHGEPGVRVEPLKSAAEVARDM 251 Query: 242 LDKLLPDLPFTRGDKVAVLLSGLGATPLMEQYILYADVADGLREAGLQVAHSFVGNLFTS 301 +L D G +VAVL+SGLGATPL E YIL + +R GL++ +++GN FTS Sbjct: 252 CQIVLDDHGLAEGTEVAVLVSGLGATPLNELYILNDTIETEIRARGLKIHRTYIGNYFTS 311 Query: 302 LEMMGVTLTLMRLDAQLDQCL 322 LEM+G TLT+M LD++L + L Sbjct: 312 LEMVGATLTVMALDSELKELL 332 >SMb20314 [G] COG2376 Dihydroxyacetone kinase Sme Sinorhizobium meliloti Length = 330 Score = 343 bits (879), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 192/320 (60%), Positives = 237/320 (74%) Query: 3 LNRIVNNPDLVVEDMLRGVLAAHPGLSAHPDNPRVLRHRSAGTPGRVGIVTGGGSGHEPA 62 + R +NNPD VVED ++G + AH + +NPRV+ + A G+VG+VTGGGSGHEPA Sbjct: 1 MQRFINNPDEVVEDTVKGFVKAHADIVRLGENPRVIVAKGAPVAGKVGVVTGGGSGHEPA 60 Query: 63 FLGYVGQGLVDAVAVGEVFSSPTAKSFMDAFQLAHGGQGIACLYGNYAGDNMNVKMAIKL 122 F+GY G+ ++DAVAVGE+FSSPTAKSF DA + A GG+G+ CLYGNYAGDNMNVKMA+KL Sbjct: 61 FIGYTGRNMLDAVAVGELFSSPTAKSFHDAIREADGGKGVVCLYGNYAGDNMNVKMAVKL 120 Query: 123 AERADIQVRTVVANDDAASAPPDQPGKRRGVAGEILMWKAGGAVAAQGGTLDEVIQAAQK 182 A +A I+V TVVANDD SAPP++ KRRGVAGEI MWK GGA AA G +L+EV AAQK Sbjct: 121 AAKAGIEVATVVANDDVCSAPPEEREKRRGVAGEIFMWKIGGAKAAAGASLEEVRAAAQK 180 Query: 183 AIDNTRSIGIGLSACTIPAVGKANFTIRHGEMEVGIGHHGEPGVSVQAVVPARDMARLML 242 AIDN RSIG+GL CT+PAVG NF I G MEVGIGHHGEPG+ V+A+ A ++A M Sbjct: 181 AIDNCRSIGVGLGPCTLPAVGHPNFRIEPGTMEVGIGHHGEPGLRVEALKTAEEVAVDMC 240 Query: 243 DKLLPDLPFTRGDKVAVLLSGLGATPLMEQYILYADVADGLREAGLQVAHSFVGNLFTSL 302 +L D +G +VAVL+SGLGATPL E YIL + + GL++ +FVGN FTSL Sbjct: 241 KIVLDDHDLPQGTEVAVLVSGLGATPLNELYILNDTIEREITARGLKIYRTFVGNYFTSL 300 Query: 303 EMMGVTLTLMRLDAQLDQCL 322 EM+G TLT+M LD +L L Sbjct: 301 EMVGATLTVMALDDELKALL 320 >mll7280 Non COG Length = 337 Score = 297 bits (760), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 157/332 (47%), Positives = 216/332 (65%), Gaps = 1/332 (0%) Query: 4 NRIVNNPDLVVEDMLRGVLAAHP-GLSAHPDNPRVLRHRSAGTPGRVGIVTGGGSGHEPA 62 +I+N+ + V++ML G+LAAHP L + +PR + R PG+VG+V GGGSGHEP Sbjct: 6 KKIINDGNRAVDEMLEGILAAHPRHLRSADGSPRSIIARDGPRPGKVGLVIGGGSGHEPT 65 Query: 63 FLGYVGQGLVDAVAVGEVFSSPTAKSFMDAFQLAHGGQGIACLYGNYAGDNMNVKMAIKL 122 FLG+VG+GL DA A+G VF+SP ++ + GG G+ +YGNYAGD MN MA ++ Sbjct: 66 FLGFVGKGLADAAAIGNVFASPPPDPILECAKAVSGGAGVLFMYGNYAGDVMNFDMAAEM 125 Query: 123 AERADIQVRTVVANDDAASAPPDQPGKRRGVAGEILMWKAGGAVAAQGGTLDEVIQAAQK 182 A DI+VRTV+ DD ASA DQ KRRGVAG ++KA GA + +LDEV + A+K Sbjct: 126 AAMDDIEVRTVLTTDDVASALRDQRQKRRGVAGNFFIFKAAGAACDRMLSLDEVERIARK 185 Query: 183 AIDNTRSIGIGLSACTIPAVGKANFTIRHGEMEVGIGHHGEPGVSVQAVVPARDMARLML 242 A D+T ++G+ LS C++P + NF I GEME+G+G HGEPG++ + A + ML Sbjct: 186 ANDHTFTMGVALSPCSLPQTRRPNFEIGAGEMEIGMGIHGEPGIARGKLGSADAITDEML 245 Query: 243 DKLLPDLPFTRGDKVAVLLSGLGATPLMEQYILYADVADGLREAGLQVAHSFVGNLFTSL 302 DK+L ++ TRGDKVAVL++ LG+TPLME YI+ V L + G+ + ++VGN TSL Sbjct: 246 DKILAEMAPTRGDKVAVLVNSLGSTPLMELYIMNRRVKQRLDDIGVTIHATWVGNYCTSL 305 Query: 303 EMMGVTLTLMRLDAQLDQCLAAPCDSIGLRQG 334 EM G ++TL LD +L L PCD R G Sbjct: 306 EMAGASVTLFHLDEELQTMLDHPCDCAMFRAG 337 >SMb20312_2 [G] COG2376 Dihydroxyacetone kinase Sme Sinorhizobium meliloti Length = 333 Score = 261 bits (667), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 136/332 (40%), Positives = 207/332 (62%), Gaps = 3/332 (0%) Query: 3 LNRIVNNPDLVVEDMLRGVLAAHPGLSAHPDN--PRVLRHRSAGTPGRVGIVTGGGSGHE 60 + + +NNP+ VVE+ML G + AH + P N R L R+ PG+VG+V GGG+GHE Sbjct: 1 VKKFLNNPNEVVEEMLDGAVKAHE-IYLQPINGSHRALVARNGPRPGKVGLVIGGGTGHE 59 Query: 61 PAFLGYVGQGLVDAVAVGEVFSSPTAKSFMDAFQLAHGGQGIACLYGNYAGDNMNVKMAI 120 P FLGYVG+GL DAVAVG +FSSP + + A GG+G+ +YGNYAGD MN +MA Sbjct: 60 PCFLGYVGKGLADAVAVGNIFSSPPPDPIVQCAEAASGGEGVLFVYGNYAGDVMNFEMAA 119 Query: 121 KLAERADIQVRTVVANDDAASAPPDQPGKRRGVAGEILMWKAGGAVAAQGGTLDEVIQAA 180 ++AE I+V+TV+ DD AS+P + RRGVAG ++K GA +G +L+ Sbjct: 120 EIAEEKGIKVKTVLTTDDVASSPVEDREGRRGVAGNFFIFKIAGAACDRGLSLEACEAVT 179 Query: 181 QKAIDNTRSIGIGLSACTIPAVGKANFTIRHGEMEVGIGHHGEPGVSVQAVVPARDMARL 240 +KA T ++G+ L ++P + NF I +MEVG+G HGEPGV+ + + A ++ Sbjct: 180 RKANLRTYTVGVALEPGSMPQTRRHNFEIGPDDMEVGMGIHGEPGVTRERIRSADEITDS 239 Query: 241 MLDKLLPDLPFTRGDKVAVLLSGLGATPLMEQYILYADVADGLREAGLQVAHSFVGNLFT 300 ++D++ ++ G++VAVL++ GATPLME YIL+ V L + + +++G+ T Sbjct: 240 IMDRIFKEMKTAPGERVAVLVNSFGATPLMELYILFRRVQQRLAAKDILIEANWIGHYCT 299 Query: 301 SLEMMGVTLTLMRLDAQLDQCLAAPCDSIGLR 332 SL+M G ++T++ LD +L L PC++ L+ Sbjct: 300 SLDMAGASITILHLDQELSDLLHHPCETAFLK 331