BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0110.p         (187 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO3349 [G] COG2376 Dihydroxyacetone kinase Ype Yersinia pestis       172   3e-43
SMb20313 [G] COG2376 Dihydroxyacetone kinase Sme Sinorhizobium m...   171   9e-43
BMEI0397 [G] COG2376 Dihydroxyacetone kinase Bme Brucella melite...   145   6e-35
lin0365 [G] COG2376 Dihydroxyacetone kinase Lin Listeria innocua       98   1e-20
Z1970 [G] COG2376 Dihydroxyacetone kinase EcZ Escherichia coli O...    97   3e-20

>YPO3349 [G] COG2376 Dihydroxyacetone kinase Ype Yersinia pestis
          Length = 224

 Score =  172 bits (437), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 89/168 (52%), Positives = 116/168 (69%), Gaps = 1/168 (0%)

Query: 13  VVQDLVSTINQHRDWLSEVDGAIGDGDHGINMSKGFSLCGERLKQDPETSLAAALDTLSI 72
           +++++ +TI  +R++LSE+DGAIGDGDHGINM+KGF+LC E +K     +LA ALD LS 
Sbjct: 22  IIEEMANTILANREYLSEIDGAIGDGDHGINMAKGFNLCAENIK-GKNLTLAEALDALSD 80

Query: 73  TLMEGIGGSMGPLYGSFFMAMSTVLEGQPTLDRQLFLKALDEGIAAVQAIGEAKVGDKTL 132
            LMEGIGGSMGPLYGS FM M+  + G   +D   F   L  G+A +Q + +A+VGDK +
Sbjct: 81  ALMEGIGGSMGPLYGSIFMGMAESIRGCDKMDAVAFGAMLKGGLADLQEVTDARVGDKCI 140

Query: 133 MDSLIPARDAFRLALGRDLPFAACLQAMQHAADTGRDSTRALQARIGR 180
           MD+LIPA  AF LA  +   F   L  M+HAA  GRDST  L A+IGR
Sbjct: 141 MDTLIPASAAFELAQQQQQSFVESLHRMKHAASMGRDSTLDLVAKIGR 188


>SMb20313 [G] COG2376 Dihydroxyacetone kinase Sme Sinorhizobium meliloti
          Length = 213

 Score =  171 bits (433), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 91/178 (51%), Positives = 115/178 (64%), Gaps = 1/178 (0%)

Query: 5   FDMRQAAWVVQDLVSTINQHRDWLSEVDGAIGDGDHGINMSKGFSLCGERLKQDPETSLA 64
           F+  +A  +V  L   I ++R +LSE+DG IGDGDHG+NM+KGF L  ERLK   + SLA
Sbjct: 4   FENARAGDIVLTLADRIIENRAYLSEIDGKIGDGDHGVNMAKGFGLAAERLKG-KDASLA 62

Query: 65  AALDTLSITLMEGIGGSMGPLYGSFFMAMSTVLEGQPTLDRQLFLKALDEGIAAVQAIGE 124
            ALDTL   LM  IGGSMGPLYG  F   +  +EG   +D   + + L  G+  +++IG 
Sbjct: 63  EALDTLGTVLMTEIGGSMGPLYGVMFTEFAEKIEGADAIDAAAYSRMLHAGLEGIRSIGS 122

Query: 125 AKVGDKTLMDSLIPARDAFRLALGRDLPFAACLQAMQHAADTGRDSTRALQARIGRPQ 182
           AKVGDKTL+D+L+PA DAF  A     PFA  L A+  AA+ GRDSTR L ARIGR  
Sbjct: 123 AKVGDKTLLDTLVPAVDAFDAATADGRPFAEALDALVSAAEAGRDSTRDLIARIGRAS 180


>BMEI0397 [G] COG2376 Dihydroxyacetone kinase Bme Brucella melitensis
          Length = 218

 Score =  145 bits (365), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 84/172 (48%), Positives = 112/172 (65%), Gaps = 1/172 (0%)

Query: 9   QAAWVVQDLVSTINQHRDWLSEVDGAIGDGDHGINMSKGFSLCGERLKQDPETSLAAALD 68
           +A  +V  +   I ++R +LSE+DG IGDG+H +NM+KGF++  ERL+   ET LAA+LD
Sbjct: 13  KAGDIVLTMAERIVENRAYLSEIDGKIGDGEHCVNMAKGFNMAAERLQGKNET-LAASLD 71

Query: 69  TLSITLMEGIGGSMGPLYGSFFMAMSTVLEGQPTLDRQLFLKALDEGIAAVQAIGEAKVG 128
           TL   LM  IGGSMGPLYG  F   +  ++G   +D   F   L  G+  +Q+IG AKVG
Sbjct: 72  TLGTVLMTEIGGSMGPLYGVMFTEFAEKIDGVDNIDAAAFSHMLHAGLEGIQSIGSAKVG 131

Query: 129 DKTLMDSLIPARDAFRLALGRDLPFAACLQAMQHAADTGRDSTRALQARIGR 180
           DKTL+D+L+PA +AF  A      FA  L+A+  AA+ GRDST  L ARIGR
Sbjct: 132 DKTLLDTLVPAVEAFDEANAAGKSFAEALEALVAAAEKGRDSTINLVARIGR 183


>lin0365 [G] COG2376 Dihydroxyacetone kinase Lin Listeria innocua
          Length = 216

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 15/176 (8%)

Query: 13  VVQDLVSTINQHRDWLSEVDGAIGDGDHGINMSKGFSLCGERLKQDPETS--LAAALDTL 70
           V+QD+ + I + RD+L+ +D  IGDGDHGIN+S GF    ++L +    S  +A  L   
Sbjct: 14  VLQDMGALIEKERDYLTGLDSDIGDGDHGINLSIGFREVNKQLDELLTVSPDIATLLKKS 73

Query: 71  SITLMEGIGGSMGPLYGSFFMAMSTVLEGQPTLDRQLFLKALDEGIAAVQAIGEAKVGDK 130
            + L+  +GG+ GPLYGSFFM     + G+  ++       +  G AAVQ  G+A++GDK
Sbjct: 74  GMILLGKVGGASGPLYGSFFMKCGADVPGKTEVNFDELCGMIINGAAAVQHRGKAELGDK 133

Query: 131 TLMDSLIPARDAFRLALGRDL------PFAACLQAMQHAADTGRDSTRALQARIGR 180
           T+MD+ +P  +  +    RD        F+A + AM HA   G  ST  L A+ GR
Sbjct: 134 TMMDAFLPGVEVLQ---NRDTNADPIETFSAFVDAM-HA---GAQSTIPLIAKKGR 182


>Z1970 [G] COG2376 Dihydroxyacetone kinase EcZ Escherichia coli O157:H7
           EDL933
          Length = 210

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 88/160 (55%)

Query: 21  INQHRDWLSEVDGAIGDGDHGINMSKGFSLCGERLKQDPETSLAAALDTLSITLMEGIGG 80
            N   ++L+ +D  IGD DHG+NM++GFS   E+L    +  +   L    +TL+  +GG
Sbjct: 19  FNTESEYLTGLDREIGDADHGLNMNRGFSKVVEKLPAIADKDIGFILKNTGMTLLSCVGG 78

Query: 81  SMGPLYGSFFMAMSTVLEGQPTLDRQLFLKALDEGIAAVQAIGEAKVGDKTLMDSLIPAR 140
           + GPL+G+FF+  +   + + +L  +   +   +G   V + G+A+ GDKT+ D  +P  
Sbjct: 79  ASGPLFGTFFIRAAQATQARQSLTLEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVV 138

Query: 141 DAFRLALGRDLPFAACLQAMQHAADTGRDSTRALQARIGR 180
           ++ R +  ++L   A L+A    A+    ST  +QAR GR
Sbjct: 139 ESLRQSSEQNLSVPAALEAASSIAEFAAQSTITMQARKGR 178