BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0099.p         (139 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2320 [K] COG1609 Transcriptional regulators Pae Pseudomonas ae...   130   7e-31
PM0791 [K] COG1609 Transcriptional regulators Pmu Pasteurella mu...   117   1e-26
YPO3955 [K] COG1609 Transcriptional regulators Ype Yersinia pestis    116   1e-26
mll1683 [K] COG1609 Transcriptional regulators Mlo Mesorhizobium...   114   9e-26
ECs4287 [K] COG1609 Transcriptional regulators Ecs Escherichia c...   112   3e-25

>PA2320 [K] COG1609 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 343

 Score =  130 bits (327), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 91/137 (66%), Gaps = 1/137 (0%)

Query: 4   RREGFRKGLLEAG-IKPEIEVLLPEPTTVDMGAQLLRRVLEQHPECDSVFCCNDDLALGA 62
           R EGFR+ L +AG   P +E+L P P++V +G +L  ++L   P+ D VF CNDDLA GA
Sbjct: 207 RGEGFRRALQKAGCYDPGLEILTPRPSSVALGGELFVQLLASQPQVDGVFFCNDDLAQGA 266

Query: 63  LFECQRQGISVPREMAIAGFNDLSWAACATPSITTVVTPRYDIGYKSAEMLVRQLKGEDI 122
           L E  R+G+ VP ++A+ GFNDL  + C  P ++++ TPR  IG ++AE L+  + G+++
Sbjct: 267 LLEALRRGVKVPEQIAVLGFNDLPGSDCTVPRLSSIRTPREAIGRRAAEQLLALIAGKEV 326

Query: 123 PKGRLDLGFELALREST 139
               LD+GFEL  REST
Sbjct: 327 RDSALDMGFELMAREST 343


>PM0791 [K] COG1609 Transcriptional regulators Pmu Pasteurella multocida
          Length = 332

 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 86/135 (63%), Gaps = 1/135 (0%)

Query: 4   RREGFRKGLLEAGIKPEIEVLLPEPTTVDMGAQLLRRVLEQHPECDSVFCCNDDLALGAL 63
           + +G+ + + + G++P   +   +P++  +GAQ L   L+Q P  D +FC NDDLA+GAL
Sbjct: 198 KMQGYEQAMKKHGLQP-YSLTTEQPSSFSLGAQQLHDALQQRPNLDGIFCTNDDLAIGAL 256

Query: 64  FECQRQGISVPREMAIAGFNDLSWAACATPSITTVVTPRYDIGYKSAEMLVRQLKGEDIP 123
           FECQR+GI VP+++AIAGF+        TP + TV+TPR +IG  + + L+ ++ G    
Sbjct: 257 FECQRRGIKVPKQIAIAGFHGHDVGQSMTPQLATVITPRLEIGKIATQELLNRIHGMPQQ 316

Query: 124 KGRLDLGFELALRES 138
              ++LG+++ L ES
Sbjct: 317 SAIINLGYQIHLGES 331


>YPO3955 [K] COG1609 Transcriptional regulators Ype Yersinia pestis
          Length = 331

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 85/130 (65%), Gaps = 1/130 (0%)

Query: 4   RREGFRKGLLEAGIKPEIEVLLPEPTTVDMGAQLLRRVLEQHPECDSVFCCNDDLALGAL 63
           +++G+ + + E+G+ P + V+    ++   GA+LLR     +P+ DS+FC NDDLA+GA+
Sbjct: 197 KQQGYEQAMRESGLVP-MSVMTSRSSSYSAGAELLREAQVSYPQIDSIFCTNDDLAIGAV 255

Query: 64  FECQRQGISVPREMAIAGFNDLSWAACATPSITTVVTPRYDIGYKSAEMLVRQLKGEDIP 123
           FECQRQG+S+P +MAIAGF+         P + +V+TPR  +G   AE L+ +L+GE + 
Sbjct: 256 FECQRQGLSIPHDMAIAGFHGHDIGQSMVPKLASVLTPRERMGQIGAERLLARLRGEGVT 315

Query: 124 KGRLDLGFEL 133
              +D+GF +
Sbjct: 316 PQMVDVGFTI 325


>mll1683 [K] COG1609 Transcriptional regulators Mlo Mesorhizobium loti
          Length = 344

 Score =  114 bits (284), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 81/138 (58%), Gaps = 1/138 (0%)

Query: 3   KRREGFRKGLLEAGI-KPEIEVLLPEPTTVDMGAQLLRRVLEQHPECDSVFCCNDDLALG 61
           +R  G+R  + + G+  P +    P  ++V +G +L R  L + P  D VFC NDD+ALG
Sbjct: 205 RRLAGYRAAMEKPGLFDPRLVTTTPLLSSVPLGRELFRDALAKMPTLDGVFCNNDDIALG 264

Query: 62  ALFECQRQGISVPREMAIAGFNDLSWAACATPSITTVVTPRYDIGYKSAEMLVRQLKGED 121
            LFEC R  I VP+ + I GFNDL     A PSIT++ T RY+IG ++  M +  + G  
Sbjct: 265 VLFECHRAAIDVPKTIGIVGFNDLDMMQVAFPSITSIRTHRYEIGRRAVAMALSAIAGNR 324

Query: 122 IPKGRLDLGFELALREST 139
             +  +DLGFEL  REST
Sbjct: 325 PEQRIVDLGFELKRREST 342


>ECs4287 [K] COG1609 Transcriptional regulators Ecs Escherichia coli O157:H7
          Length = 331

 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 85/131 (64%), Gaps = 1/131 (0%)

Query: 4   RREGFRKGLLEAGIKPEIEVLLPEPTTVDMGAQLLRRVLEQHPECDSVFCCNDDLALGAL 63
           +++G+ + +L+AG+ P   V++ + ++   G +L+R+   ++P+ D VFC NDDLA+GA 
Sbjct: 197 KQKGYEQAMLDAGLVP-YSVMVEQSSSYSSGIELIRQARREYPQLDGVFCTNDDLAVGAA 255

Query: 64  FECQRQGISVPREMAIAGFNDLSWAACATPSITTVVTPRYDIGYKSAEMLVRQLKGEDIP 123
           FECQR G+ VP +MAIAGF+         P + +V+TPR  +G   AE L+ +++GE + 
Sbjct: 256 FECQRLGLKVPDDMAIAGFHGHDIGQVMEPRLASVLTPRERMGSIGAERLLARIRGESVT 315

Query: 124 KGRLDLGFELA 134
              LDLGF L+
Sbjct: 316 PKMLDLGFTLS 326