BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0091.p (379 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1734 [E] COG3842 ABC-type spermidine/putrescine transport sys... 480 e-135 PA0603 [E] COG3842 ABC-type spermidine/putrescine transport syst... 450 e-126 YPO2846 [E] COG3842 ABC-type spermidine/putrescine transport sys... 395 e-109 BMEII0922 [E] COG3842 ABC-type spermidine/putrescine transport s... 362 1e-99 SMa1754 [E] COG3842 ABC-type spermidine/putrescine transport sys... 347 2e-95 >RSc1734 [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components Rso Ralstonia solanacearum Length = 363 Score = 480 bits (1235), Expect = e-135, Method: Compositional matrix adjust. Identities = 237/359 (66%), Positives = 280/359 (77%), Gaps = 1/359 (0%) Query: 21 NDVLVQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGG 80 +DV+V F GV+KTYDGE L+VK+LDLDI +GEFLTLLGPSGSGKTTCLMMLAGFEFPTGG Sbjct: 4 DDVIVSFRGVRKTYDGETLVVKHLDLDIYQGEFLTLLGPSGSGKTTCLMMLAGFEFPTGG 63 Query: 81 EIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQAL 140 EIRL+G LLN VPPHKRNIGMVFQNYALFPH+T+AQNV YPL+VRK+ A R +V AL Sbjct: 64 EIRLEGTLLNTVPPHKRNIGMVFQNYALFPHLTVAQNVEYPLTVRKLAAAERAERVHHAL 123 Query: 141 DMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKA 200 MV+M F RYP QLSGGQQQR+ALAR LVF+P+LVLMDEPLGALDKQLREHMQ ELK+ Sbjct: 124 KMVRMEGFAKRYPAQLSGGQQQRIALARALVFEPKLVLMDEPLGALDKQLREHMQYELKS 183 Query: 201 LHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNN 260 LH++LGVTFVYVTHDQ EALTMSDRVAVFD+GV+QQL V LYE P N FVANFIGD+N Sbjct: 184 LHEKLGVTFVYVTHDQGEALTMSDRVAVFDKGVVQQLDTVDRLYESPCNAFVANFIGDSN 243 Query: 261 RLKGSVESVQGEHCTVRLADGTVVTGLNVHRAHAGQSITACVRPERIRLAAGGSAEP-NS 319 L+G+V + G++C ++L DG V G NV A G + C+RPER+RLA A N+ Sbjct: 244 TLRGTVVGLDGDYCQLQLNDGARVIGRNVAGAPVGAAAVGCIRPERMRLAEPADAGAGNA 303 Query: 320 IRATIAGLIYFGDHVRVRCTVTGQEDCFVKLSLSDPALAGLSEGSSVVLHVAQDRLRCF 378 + GL+YFGDHVR+RC + Q +CFVK+ L AL + G+ + L A + LR F Sbjct: 304 LAGQTRGLVYFGDHVRMRCALPEQAECFVKVPLGTRALESFAPGAPIRLEFAPEHLRVF 362 >PA0603 [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components Pae Pseudomonas aeruginosa Length = 369 Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust. Identities = 223/345 (64%), Positives = 260/345 (75%), Gaps = 2/345 (0%) Query: 16 ATGSGNDVLVQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFE 75 A G DVLV F GV+K+YDGE LIVK+L+LDIR+GEFLTLLGPSGSGKTT LMMLAGFE Sbjct: 2 AETQGGDVLVSFRGVQKSYDGETLIVKDLNLDIRKGEFLTLLGPSGSGKTTSLMMLAGFE 61 Query: 76 FPTGGEIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAK 135 PT GEI L G+ +N VPPHKR+IGMVFQNYALFPHMT+A+N+A+PLSVR M + + + Sbjct: 62 TPTAGEILLAGRSINNVPPHKRDIGMVFQNYALFPHMTVAENLAFPLSVRGMSKTDVKER 121 Query: 136 VKQALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQ 195 VK+AL MVQ+ F RYP QLSGGQQQRVALAR LVF+PQLVLMDEPLGALDKQLREHMQ Sbjct: 122 VKRALSMVQLDAFAGRYPAQLSGGQQQRVALARALVFEPQLVLMDEPLGALDKQLREHMQ 181 Query: 196 LELKALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANF 255 +E+K LH+RLGVT VYVTHDQ EALTMSDRVAVF QG IQQ+ P LYE P N FVANF Sbjct: 182 MEIKHLHQRLGVTVVYVTHDQGEALTMSDRVAVFHQGEIQQIEPPRNLYEQPRNTFVANF 241 Query: 256 IGDNNRLKGSVESVQGEHCTVRLADGTVVTGLNVHRAHAGQSITACVRPERIRLAAGGSA 315 IG+NNRL G + S GE C V L G V L V+ G+ +T +RPER+RL + Sbjct: 242 IGENNRLSGQLLSCDGERCVVGLPRGEKVEALAVNVGQPGEPVTLSIRPERVRLNGASES 301 Query: 316 EPNSIRATIAGLIYFGDHVRVRCTVTGQEDCFVKLSLS--DPALA 358 N +A +Y GDHVRVR V G++D FVK ++ DP L+ Sbjct: 302 CVNRFSGRVAEFVYLGDHVRVRLEVCGRDDFFVKQPIAELDPTLS 346 >YPO2846 [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components Ype Yersinia pestis Length = 361 Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust. Identities = 199/358 (55%), Positives = 253/358 (70%), Gaps = 10/358 (2%) Query: 25 VQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRL 84 V F +KK+YDG+ L+VKNL+LDI G+FLTLLGPSGSGKTT LMMLAGFE PT GEI L Sbjct: 5 VSFKNIKKSYDGDKLVVKNLNLDIHEGDFLTLLGPSGSGKTTSLMMLAGFETPTQGEITL 64 Query: 85 DGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQ 144 + L+ +PPH+R IGMVFQNYALFPHMT+ +N+A+PL++R++++A + K+ + LDMV+ Sbjct: 65 RDKPLHNLPPHQRGIGMVFQNYALFPHMTVTENLAFPLTIRRLNKADIKEKIDRILDMVK 124 Query: 145 MGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKR 204 + DRYP Q+SGGQQQRVALAR LVF+P+LVLMDEPLGALDKQLREHMQLE+K LHK Sbjct: 125 LKNLADRYPAQMSGGQQQRVALARALVFEPKLVLMDEPLGALDKQLREHMQLEIKQLHKM 184 Query: 205 LGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRLKG 264 L +T VYVTHDQSEA+T+S+RV VF+ G+IQQ+ + +YE P N FVA FIG+NN L Sbjct: 185 LELTIVYVTHDQSEAMTLSNRVVVFNDGIIQQMDSPSVIYEQPSNTFVAQFIGENNCLLA 244 Query: 265 SVESVQGEHCTVRLADGTVVTGLNVHRAHAGQSITACVRPERIRL--AAGGSAEPNSIRA 322 + GE+ L DGT + L V + G+ I C+RPER+ + A GS + I+A Sbjct: 245 VNQGSDGEYYRAMLDDGTRLQALKVCPSSPGKKIMLCIRPERVSVNHPAAGSQQ---IKA 301 Query: 323 TIAGLIYFGDHVRVRCTVTGQEDCFVKLSLS--DPALAGLSEGSSVVLHVAQDRLRCF 378 I IY GDHVR+ V GQ + VKLS + +P GS V+L LR Sbjct: 302 RIQQFIYLGDHVRMMTEVAGQGNFMVKLSAAHIEPH---WQPGSEVLLSWMPAHLRAL 356 >BMEII0922 [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components Bme Brucella melitensis Length = 355 Score = 362 bits (928), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 174/317 (54%), Positives = 233/317 (73%), Gaps = 2/317 (0%) Query: 22 DVLVQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGE 81 D +F + K+Y G+ ++ L+LDI RGEF++LLGPSGSGKTT LMMLAGFE P+ G Sbjct: 3 DYRTRFENISKSY-GDFKVIDGLNLDIERGEFVSLLGPSGSGKTTLLMMLAGFENPSSGT 61 Query: 82 IRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALD 141 I +DG+ +N VP +KRN+G+VFQNYALFPHMT+A+N+A+PL +R + +A KV + LD Sbjct: 62 IHVDGKSINSVPSYKRNMGVVFQNYALFPHMTVAENIAFPLQMRGVGKAQAAEKVARVLD 121 Query: 142 MVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKAL 201 MVQ+ +R P+QLSGGQQQRVALAR LVF+P +VLMDEPLGALDKQLRE MQL+++AL Sbjct: 122 MVQLSAMSERKPSQLSGGQQQRVALARALVFEPHVVLMDEPLGALDKQLREQMQLDIRAL 181 Query: 202 HKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNR 261 H RLG+T V+VTHDQSEALTMSDR+AVF++G I+Q+ +Y+ P +FVA FIG+ N Sbjct: 182 HNRLGLTIVFVTHDQSEALTMSDRIAVFNKGKIEQIGSPRAIYDEPQTRFVAEFIGETNL 241 Query: 262 LKGSVESVQGEHCTVRLADGTVVTGLNVHRAHAGQSITACVRPERIRLAAGGSAEPNSIR 321 +G+VESV+G +RL D T + + R +GQ++ +RPERI L AE N + Sbjct: 242 AEGTVESVEGSRILIRLKDATAIAASSASRPISGQNVLLSIRPERIELGEADGAE-NRLA 300 Query: 322 ATIAGLIYFGDHVRVRC 338 A + +Y GDH+R++ Sbjct: 301 ARVMDSVYQGDHLRIQL 317 >SMa1754 [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components Sme Sinorhizobium meliloti Length = 359 Score = 347 bits (891), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 171/314 (54%), Positives = 227/314 (72%), Gaps = 1/314 (0%) Query: 24 LVQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIR 83 +QF + K Y G +V+NL L I +GEF++LLGPSGSGKTT LMMLAGFE PT G I Sbjct: 8 FIQFDRITKFY-GPLCVVENLVLGIGQGEFVSLLGPSGSGKTTLLMMLAGFEQPTSGNIL 66 Query: 84 LDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMV 143 LDG +N VP HKR++G+VFQ+YALFPHM++ +NVA+PL +R + +A V +ALDMV Sbjct: 67 LDGTAINDVPTHKRDMGVVFQSYALFPHMSVGENVAFPLQMRGLGKAEIAECVARALDMV 126 Query: 144 QMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHK 203 Q+ F DR P+QLSGGQQQRVAL+R LVF+P++VLMDEPLGALDKQLRE MQ +++ LH+ Sbjct: 127 QLSAFADRRPSQLSGGQQQRVALSRALVFEPRVVLMDEPLGALDKQLREQMQFDIRDLHR 186 Query: 204 RLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRLK 263 RLG+T V+VTHDQSEALTMSDRVAVF++G I+Q+ ++Y+ P +FVA FIG+ N ++ Sbjct: 187 RLGLTIVFVTHDQSEALTMSDRVAVFNRGKIEQIGTPRQVYDEPATRFVAEFIGETNLVE 246 Query: 264 GSVESVQGEHCTVRLADGTVVTGLNVHRAHAGQSITACVRPERIRLAAGGSAEPNSIRAT 323 G VE+VQG+ VRL G + +GQS+ +RPER+ L+ N + Sbjct: 247 GVVETVQGQEAIVRLPSGAHIVSAGSGSLVSGQSVFLSIRPERVDLSETRGDARNCLETE 306 Query: 324 IAGLIYFGDHVRVR 337 + +Y GDH+RV+ Sbjct: 307 VTDSVYQGDHLRVQ 320