BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0080.p (431 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20625 [G] COG2814 Arabinose efflux permease Sme Sinorhizobium... 405 e-112 mll3374 Non COG 404 e-112 mll6183 Non COG 399 e-110 AGl2058 [G] COG2814 Arabinose efflux permease Atu Agrobacterium ... 251 3e-66 yicM [G] COG2814 Arabinose efflux permease Eco Escherichia coli K12 243 4e-64 >SMb20625 [G] COG2814 Arabinose efflux permease Sme Sinorhizobium meliloti Length = 401 Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust. Identities = 213/370 (57%), Positives = 266/370 (71%) Query: 36 KAAQDLPANWSGIASLALGVFSLVTAEFLPASLLTAIATDLHVSDGAAGQAVTATAIVGA 95 ++ + + W+G+ SLALGVF LVTAEFLP S+LT +A DL +S G AGQAVTATA VGA Sbjct: 15 ESEERIDPAWAGVGSLALGVFGLVTAEFLPVSILTPMAADLGISTGTAGQAVTATASVGA 74 Query: 96 VAAPSIPLLTRNIDRKRVVLMLTLLLLVSNLMAVLAPNLPILLVARVLLGVALGGFWSMA 155 VA +I + TR DR+ V+ TL L+ S+L+A A NL +LL ARV+LG+ LGGFWSM Sbjct: 75 VAGLTIAIATRRFDRRLVLWGFTLALIASSLLAAFATNLAMLLAARVVLGIGLGGFWSMM 134 Query: 156 AALAMRLVPDHLFARAMSLILTGVSVATVCAAPIGAYMGNLWGWRSAFIAAGVVSLVAFA 215 AA+A+RLVP L RAMS++ TGVSVATVCAAPIGAY+G+LWGWR+AF+ A V V Sbjct: 135 AAIALRLVPMSLVPRAMSIVFTGVSVATVCAAPIGAYIGDLWGWRAAFLMAAAVGAVTLI 194 Query: 216 IQWIAIPRLPPKDHPSLKVLAELLGRKDVRVALMAVLLVVSGHFAGFTYIRPLMEQITHM 275 +Q IPRLPP+ PSLK+L +L+ +R+ ++ VLL VSGHFAGFTY+RP +E + Sbjct: 195 VQMATIPRLPPQSAPSLKLLFDLMRMPSIRIGIITVLLFVSGHFAGFTYVRPFLENVPEF 254 Query: 276 SVATISAVLLGYGVGGFFGNFAGGFIAERSERYAIVSGGTLIALLAASLWVAGSSPVVAA 335 + IS +LL YG GGFFGN AGG I ERS A+ G LIA +A +L GS VV+A Sbjct: 255 GIEAISLILLAYGTGGFFGNLAGGLIIERSITAAVSIGTLLIAAMAFALVTFGSFDVVSA 314 Query: 336 IAITLWGFAFGAFPVGFQTWIVRAAPDHAEGAGGLMVAAFQVAIASGAIGGGVLVDHVGA 395 +A+TLWGFAFGA PV QTW+VRAAPDHAE GGL+VA FQV IASGA+ GG+ VD G Sbjct: 315 VAVTLWGFAFGALPVAVQTWMVRAAPDHAESTGGLIVATFQVGIASGAVLGGLFVDSFGP 374 Query: 396 LGGPIFAVIA 405 LG + +A Sbjct: 375 LGAITYCAVA 384 >mll3374 Non COG Length = 404 Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust. Identities = 227/387 (58%), Positives = 290/387 (74%), Gaps = 1/387 (0%) Query: 33 PAHKAAQDLPANWSGIASLALGVFSLVTAEFLPASLLTAIATDLHVSDGAAGQAVTATAI 92 PA + PA W + SLALGVF LVTAEFLPASLLT +A DL V++G AGQAVTATAI Sbjct: 16 PADTDERTEPA-WGAVVSLALGVFGLVTAEFLPASLLTPMARDLGVTEGVAGQAVTATAI 74 Query: 93 VGAVAAPSIPLLTRNIDRKRVVLMLTLLLLVSNLMAVLAPNLPILLVARVLLGVALGGFW 152 VGA+AAP++ ++TR +DR+ V+ MLT L++SNL+A A +LP+LL+ARV+LGVALGGFW Sbjct: 75 VGAIAAPTMAIITRRMDRRLVMWMLTSFLILSNLLATFAASLPMLLLARVVLGVALGGFW 134 Query: 153 SMAAALAMRLVPDHLFARAMSLILTGVSVATVCAAPIGAYMGNLWGWRSAFIAAGVVSLV 212 +M+AA+A+RLVP L RAMS+ILTGVS+ATV AAP+GAY+G++WGWR+AF+ A +V + Sbjct: 135 AMSAAMALRLVPMRLMPRAMSIILTGVSLATVTAAPLGAYVGDIWGWRTAFMIATIVGAL 194 Query: 213 AFAIQWIAIPRLPPKDHPSLKVLAELLGRKDVRVALMAVLLVVSGHFAGFTYIRPLMEQI 272 A +Q IP+LPP S L ++L R +RVAL+ VLLV SGHFAGFTY+RP +E++ Sbjct: 195 ALLVQLATIPKLPPMGVASFLTLLDVLKRPSIRVALLVVLLVASGHFAGFTYVRPFLEKV 254 Query: 273 THMSVATISAVLLGYGVGGFFGNFAGGFIAERSERYAIVSGGTLIALLAASLWVAGSSPV 332 + + TIS VLL YG+GGFFGN AGGF+AER+ + A+ LIAL AAS+ + G SP Sbjct: 255 PVLHIETISLVLLAYGIGGFFGNIAGGFLAERNLKIAVALAPLLIALAAASMLIFGPSPT 314 Query: 333 VAAIAITLWGFAFGAFPVGFQTWIVRAAPDHAEGAGGLMVAAFQVAIASGAIGGGVLVDH 392 +AA A+T WGFAFGA PVG Q+W+VRAAPD AE AGGLMVA FQVAIA GA+ GG+LVDH Sbjct: 315 IAAAAVTAWGFAFGAVPVGLQSWLVRAAPDQAESAGGLMVATFQVAIALGAVFGGLLVDH 374 Query: 393 VGALGGPIFAVIAISLGTLLTLRYGPR 419 G + IA L ++ GP+ Sbjct: 375 AGVASAFAYCGIATLLAAIVVFLRGPK 401 >mll6183 Non COG Length = 475 Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust. Identities = 213/388 (54%), Positives = 280/388 (72%), Gaps = 2/388 (0%) Query: 33 PAHKAAQDLPANWSGIASLALGVFSLVTAEFLPASLLTAIATDLHVSDGAAGQAVTATAI 92 P + PA W + SLALG F LVTAEFLPAS+LT +A DL +++GA GQA+T TAI Sbjct: 83 PKQPDQRSGPA-WGAVISLALGTFGLVTAEFLPASVLTPLAHDLSITEGAVGQALTTTAI 141 Query: 93 VGAVAAPSIPLLTRNIDRKRVVLMLTLLLLVSNLMAVLAPNLPILLVARVLLGVALGGFW 152 VGA++AP++ ++TR +DR+ V+ +TLLL++SN+++ +A +LP+LL ARV+LG+ALGGFW Sbjct: 142 VGAISAPTMAVITRPLDRRIVIWAMTLLLILSNVLSAVAGSLPVLLAARVVLGIALGGFW 201 Query: 153 SMAAALAMRLVPDHLFARAMSLILTGVSVATVCAAPIGAYMGNLWGWRSAFIAAGVVSLV 212 S++AALAMRLVP HL RAMS+ILTGV+ ATVCAAPIGAY+G++WGWR+AF+ A VV V Sbjct: 202 SISAALAMRLVPSHLLRRAMSIILTGVTCATVCAAPIGAYVGDIWGWRTAFMIAAVVGAV 261 Query: 213 AFAIQWIAIPRLPPKDHPSLKVLAELLGRKDVRVALMAVLLVVSGHFAGFTYIRPLMEQI 272 +Q I IPRLPP S + L ++ ++VA++ VLLV SGHFAGFTYIR +E+ Sbjct: 262 TLVVQLITIPRLPPIGVASFRSLLDVAKNPMIKVAMLVVLLVASGHFAGFTYIRAFLEKF 321 Query: 273 THMSVATISAVLLGYGVGGFFGNFAGGFIAERSERYAIVSGGTLIALLAASLWVAGSSPV 332 + + TIS VLL +G+GGFFGN AGGF+AE S + A IA+ SL G+S Sbjct: 322 PALDIETISLVLLVFGIGGFFGNLAGGFLAEHSLKAAAALPPLFIAMATVSLLTLGASAW 381 Query: 333 VAAIAITLWGFAFGAFPVGFQTWIV-RAAPDHAEGAGGLMVAAFQVAIASGAIGGGVLVD 391 AIA+T+WGFAFGA PVG QTW+V AAP+ AE AGGLM A FQVAIA+GAI GG+L+D Sbjct: 382 ATAIAVTVWGFAFGAVPVGLQTWMVLHAAPEQAESAGGLMAATFQVAIAAGAIFGGLLMD 441 Query: 392 HVGALGGPIFAVIAISLGTLLTLRYGPR 419 + G ++ +A LG L GP+ Sbjct: 442 NAGVASSLAYSAVASFLGALTVFLLGPK 469 >AGl2058 [G] COG2814 Arabinose efflux permease Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 402 Score = 251 bits (640), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 153/355 (43%), Positives = 220/355 (61%), Gaps = 4/355 (1%) Query: 43 ANWSGIASLALGVFSLVTAEFLPASLLTAIATDLHVSDGAAGQAVTATAIVGAVAAPSIP 102 A W + S+A F+LV+AEFLPA LLT +A DL +++G AGQ VTATA VGAV A Sbjct: 26 ATWFAVLSMAATSFALVSAEFLPAGLLTPMARDLGITEGTAGQVVTATASVGAVTALFSN 85 Query: 103 LLTRNIDRKRVVLMLTLLLLVSNLMAVLAPNLPILLVARVLLGVALGGFWSMAAALAMRL 162 +L ++RK V++ L+ L + SN++A A + +LLV R LG+AL GFW+++ A+ RL Sbjct: 86 VLIGKLNRKTVLVGLSALAIGSNILASFATDFWLLLVGRAGLGIALSGFWALSVAVVARL 145 Query: 163 VPDHLFARAMSLILTGVSVATVCAAPIGAYMGNLWGWRSAFIAAGVVSLVAFAIQWIAIP 222 V + R M+++ GVS+AT+ A +GA + + GWR A ++ +A +Q +++P Sbjct: 146 VGANATGRGMAIVTLGVSLATIAAPSMGALISDWLGWRVAMSMTAGLAAIAMLLQILSLP 205 Query: 223 RLPPKDHPSLKVLAELLGRKDVRVALMAVLLVVSGHFAGFTYIRPLMEQITHMSVATISA 282 LP SL + L R V++ ++A+LL+++GHFAG Y+RP +EQ+TH+ I+ Sbjct: 206 TLPASTSNSLADVFRLTRRPSVQLGMLAILLLMTGHFAGSVYVRPFLEQVTHLDTTPIAL 265 Query: 283 VLLGYGVGGFFGNFAGGFIAERSERYAIVSGGTLI--ALLAASLWVAGSSPVVAAIAITL 340 LLG+GV GN AGG +A+ S R A+ L+ A L W A +S A +A L Sbjct: 266 ALLGFGVASVLGNVAGGRMADNSIRLALAVTAALMGFATLFLVFWGAHTSAAFALVA--L 323 Query: 341 WGFAFGAFPVGFQTWIVRAAPDHAEGAGGLMVAAFQVAIASGAIGGGVLVDHVGA 395 WGFAFG PV T + R APD E AG LMV +FQVAI+ GA+ GG +VD+ GA Sbjct: 324 WGFAFGMAPVVLPTNLSRGAPDALEAAGSLMVVSFQVAISIGAVFGGYIVDYYGA 378 >yicM [G] COG2814 Arabinose efflux permease Eco Escherichia coli K12 Length = 451 Score = 243 bits (621), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 142/353 (40%), Positives = 207/353 (58%), Gaps = 4/353 (1%) Query: 44 NWSGIASLALGVFSLVTAEFLPASLLTAIATDLHVSDGAAGQAVTATAIVGAVAAPSIPL 103 NWS + S+A V L+ EFLP SLLT +A DL +S+G AGQ+VT TA V A+ I Sbjct: 73 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQ 132 Query: 104 LTRNIDRKRVVLMLTLLLLVSNLMAVLAPNLPILLVARVLLGVALGGFWSMAAALAMRLV 163 + DR+ VV++ +LL +S L+ A + +LL+ R LG+ALGGFW+M+A+L MRLV Sbjct: 133 TIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLV 192 Query: 164 PDHLFARAMSLILTGVSVATVCAAPIGAYMGNLWGWRSAFIAAGVVSLVAFAIQWI--AI 221 P +A+S+I VS+A V AAP+G+++G L GWR+ F AA V+ ++ I WI ++ Sbjct: 193 PPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVL--CIFWIIKSL 250 Query: 222 PRLPPKDHPSLKVLAELLGRKDVRVALMAVLLVVSGHFAGFTYIRPLMEQITHMSVATIS 281 P LP + + LL R V ++A+ + +G FA FTYIRP+ + V ++ Sbjct: 251 PSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLT 310 Query: 282 AVLLGYGVGGFFGNFAGGFIAERSERYAIVSGGTLIALLAASLWVAGSSPVVAAIAITLW 341 VLL +G+ F G FI +RS + A+ ++A+ A L + GS +VA +W Sbjct: 311 LVLLSFGIASFIGTSLSSFILKRSVKLALAGAPLILAVSALVLTLWGSDKIVATGVAIIW 370 Query: 342 GFAFGAFPVGFQTWIVRAAPDHAEGAGGLMVAAFQVAIASGAIGGGVLVDHVG 394 G F PVG+ TWI R+ D AE AG + VA Q+A GA GG +D++G Sbjct: 371 GLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG 423