BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0066.p (294 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1086 [K] COG2207 AraC-type DNA-binding domain-containing prot... 445 e-125 PA2337 [K] COG2207 AraC-type DNA-binding domain-containing prote... 231 1e-60 mlr4907 [K] COG2207 AraC-type DNA-binding domain-containing prot... 206 4e-53 AGl1135 [K] COG2207 AraC-type DNA-binding domain-containing prot... 129 8e-30 VC1260 [K] COG2207 AraC-type DNA-binding domain-containing prote... 104 2e-22 >AGl1086 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 305 Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust. Identities = 202/287 (70%), Positives = 241/287 (83%) Query: 1 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPG 60 MQPDLELVHIRKGESFAAW HGYPFRTVRWHYHPEYEIHLVVATSG FY+GD +G F+PG Sbjct: 12 MQPDLELVHIRKGESFAAWRHGYPFRTVRWHYHPEYEIHLVVATSGTFYIGDFVGRFSPG 71 Query: 61 QLVMTGPNLPQNWISDIGRDEVVPVRSLVIQFPEQLVDQCAASIPEMDAIMPLLERSHRG 120 QL+MTGPNLPQNWIS+I DE+VP RSLVIQFPE ++ S+ EMD + LL+RS RG Sbjct: 72 QLIMTGPNLPQNWISEIEPDEIVPTRSLVIQFPESFIEDACTSMAEMDVVRALLDRSRRG 131 Query: 121 LLFDAATSDTVRPLMQRLIDQRGLKRLALFWEILDVLANSPEPEVLASLSYKLDLSGVNS 180 +LFD TSD VRPL+ RLI+ +GL RLALFWEILD+L N+P EVLASLSY+LDL+G+ Sbjct: 132 ILFDDETSDRVRPLVLRLIEAQGLTRLALFWEILDLLVNAPSSEVLASLSYELDLTGIGD 191 Query: 181 SGLNRAIAYLREHLTDDIGEQDLADMVGQNLSTFSRAFKRHTGTTLVRYKNQLRVDLACL 240 SG+NRA+++LR+HLT+ + E DLADMVGQ+ S FSRAFKRHTGTTLVRY+NQLR+DLAC Sbjct: 192 SGINRALSHLRQHLTEQVEEIDLADMVGQSPSAFSRAFKRHTGTTLVRYRNQLRIDLACQ 251 Query: 241 ALLNNPEARITDICYETGFSNLSNFNRHFQKIKGMSPSEFRNTFASN 287 LL + + ++ ++CY+ GFSNLSNFNRHF K+KGMSPS FR FA+ Sbjct: 252 MLLADQDVKVAEVCYDVGFSNLSNFNRHFLKLKGMSPSRFRTIFAAQ 298 >PA2337 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 301 Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 110/280 (39%), Positives = 177/280 (63%), Gaps = 2/280 (0%) Query: 3 PDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPGQL 62 P EL+ +G S HG+P VRWH+H EYE+HL+VA+SG+ ++GD+IG+FAP L Sbjct: 10 PSYELMDDHEGHSLIYRQHGFPSPLVRWHFHKEYELHLIVASSGKVFIGDYIGNFAPDTL 69 Query: 63 VMTGPNLPQNWISDIGRDEVVPVRSLVIQFPEQLVDQCAASIPEMDAIMPLLERSHRGLL 122 +TGPNLP NWIS + DEVV R +++ F +++++ + E++ + PLL R+ G+ Sbjct: 70 FLTGPNLPHNWISQVEPDEVVARRDMLVNFTDEVLEDGSGVFSELNRLAPLLARARYGIE 129 Query: 123 F-DAATSDTVRPLMQRLIDQRGLKRLALFWEILDVLANSPEPEVLASLSYKLDLSGVNSS 181 F D A R L+QR+ D G+ RL F+ +++ LA + ++L++++ N Sbjct: 130 FRDPALIGESRRLLQRIADSGGMTRLGYFFILMEQLAECEDYQLLSTVTSSQLADEHNVE 189 Query: 182 GLNRAIAYLREHLTDDIGEQDLADMVGQNLSTFSRAFKRHTGTTLVRYKNQLRVDLACLA 241 +NRA+ Y+ +H D+ ++ +A +G + FSR FK+ G V + N+LR+ +C Sbjct: 190 RINRAVDYIFQHYAQDLTQEQVAAHLGMTPTYFSRFFKQAAGRGFVEFVNRLRISKSC-E 248 Query: 242 LLNNPEARITDICYETGFSNLSNFNRHFQKIKGMSPSEFR 281 LL E +T++C+E+GFSNLSNFNR FQ++KGM+P+ +R Sbjct: 249 LLARSELPVTEVCFESGFSNLSNFNRRFQQLKGMTPTGYR 288 >mlr4907 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 305 Score = 206 bits (525), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 106/280 (37%), Positives = 165/280 (58%), Gaps = 1/280 (0%) Query: 3 PDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPGQL 62 P E + +SF + YP+ W++HPEYEIHL+ +SG VGDHIG+F PG L Sbjct: 17 PAFEHIVTEASDSFLWRLDDYPWERNVWNFHPEYEIHLLRKSSGVVLVGDHIGEFGPGYL 76 Query: 63 VMTGPNLPQNWISDIGRDEVVPVRSLVIQFPEQLVDQCAASIPEMDAIMPLLERSHRGLL 122 + G LP +W++ + E++ R +V+QF Q + A +PE+ + P LERS RG++ Sbjct: 77 TIVGGGLPHDWVTAVRPGELIEGRDIVLQFDAQRLRGSAGLLPELRELEPFLERSLRGMV 136 Query: 123 FDAATSDTVRPLMQRLIDQRGLKRLALFWEILDVLANSPEPEVLASLSYKLDLSGVNSSG 182 F T+ LM+R+ GL RL LF E++D+LA + E E+L+S + L + Sbjct: 137 FHGRTALEGAGLMERMGTVHGLARLCLFLELVDLLARTDEYELLSSPDFSPVLDAASLDI 196 Query: 183 LNRAIAYLREHLTDDIGEQDLADMVGQNLSTFSRAFKRHTGTTLVRYKNQLRVDLACLAL 242 + R + YL +H +D+ D+A+ G + STFSR F+++TG + + +LR+ AC L Sbjct: 197 IQRTLTYLFQHFAEDLKLPDVAERAGMSESTFSRFFQKNTGNSFSDHLAKLRLWQAC-KL 255 Query: 243 LNNPEARITDICYETGFSNLSNFNRHFQKIKGMSPSEFRN 282 L + + ITDIC++ G+ N+SNFNR F + M+PS +R Sbjct: 256 LADTDVAITDICFQVGYMNISNFNRAFLRKHKMTPSSYRK 295 >AGl1135 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 313 Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 142/290 (48%), Gaps = 13/290 (4%) Query: 1 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPG 60 M+P E V + S+ + P WHYHPE+E+ L + ++G +VGD + ++ G Sbjct: 17 MEPWFEAVSVPADRSWLLFDRRLPEFPFNWHYHPEFELTLTLNSAGMRFVGDSVENYGDG 76 Query: 61 QLVMTGPNLPQNWISDIGRDEVVPVRSLVIQFPEQLVDQCAASIPEMDAIMPLLERSHRG 120 LV+ GPNLP W S + R++V F ++ A PE+ AI PLL S G Sbjct: 77 DLVLLGPNLPHAWQSHGLINAPGVHRAVVCWFTRDWIEGLIALTPELSAITPLLVESGHG 136 Query: 121 LLFD----AATSDTVRPLMQRLIDQRGLKRLALFWEILDVLANSP--EPEVLASLSYKLD 174 + F A + + L + +Q+ L L + ++ V P EV AS + + Sbjct: 137 ICFGEDALAKVGERLATLHKIAPEQQILTLLGVLVDLARVSDRRPLSAGEVTASTAPR-- 194 Query: 175 LSGVNSSGLNRAIAYLREHLTDDIGEQDLADMVGQNLSTFSRAFKRHTGTTLVRYKNQLR 234 + + + R + ++ H I + L+++ + S R FKR T T+ +Y QLR Sbjct: 195 ----DRARMQRVLNHIHAHYIGTISIKPLSEIAHLSDSQLQRLFKRSTRMTISQYIGQLR 250 Query: 235 VDLACLALLNNPEARITDICYETGFSNLSNFNRHFQKIKGMSPSEFRNTF 284 V AC LL + + I ETGFS+ ++F+R F+ +GM+P ++R F Sbjct: 251 VGGAC-RLLAQTDLSLARIAEETGFSDAAHFSRQFRAARGMTPGDYRRQF 299 >VC1260 [K] COG2207 AraC-type DNA-binding domain-containing proteins Vch Vibrio cholerae Length = 299 Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 121/264 (45%), Gaps = 8/264 (3%) Query: 30 WHYHPEYEIHLVVATSGRF----YVGDHIGDFAPGQLVMTGPNLPQNWISDIGRDEVVPV 85 WHYH EYE+ L RF + GD IG L++ GP LP ++ + Sbjct: 34 WHYHTEYELVLYQNPDQRFVGNYFAGDAIGAVEHNTLLLYGPGLPHMIAGRQLINKAQTL 93 Query: 86 RSLVIQFPEQLVDQCAASIPEMDAIMPLLERSHRGLLFDAATSDTVRPLMQRLIDQRGLK 145 S +I F ++ +D+ + +P+ A+ L + + G+ T+ V L+ + Q Sbjct: 94 HSTIIWFKQEWLDKLQSVLPQAQALQRLQQHASYGVRLSEQTATRVAELLANVDQQPHSY 153 Query: 146 RLALFWEILDVLANSPEPEVLASLSYKLDLSGVNS---SGLNRAIAYLREHLTDDIGEQD 202 + E L V+A+ + + L+ Y + NS + A Y+ +H I D Sbjct: 154 QSLRVIESLLVMADDAQAQRLSVAPYVMTALTSNSDTHKKIQLAKQYVEQHYAQAIKITD 213 Query: 203 LADMVGQNLSTFSRAFKRHTGTTLVRYKNQLRVDLACLALLNNPEARITDICYETGFSNL 262 L + + S+ R F++H G + + Q R+ AC LL + I I TGF NL Sbjct: 214 LCHQLHLSESSAYRLFEKHYGMSFSEHLKQFRIGKAC-ELLASSALPIALIAERTGFGNL 272 Query: 263 SNFNRHFQKIKGMSPSEFRNTFAS 286 SNFNR F+ +K M+P EFR F + Sbjct: 273 SNFNRQFKTLKTMTPREFRQRFQA 296