BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0054.p (312 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc02774 [G] COG1879 ABC-type sugar transport system, periplasmi... 155 2e-37 AGc5109 [G] COG1879 ABC-type sugar transport system, periplasmic... 152 8e-37 mlr3334 [G] COG1879 ABC-type sugar transport system, periplasmic... 150 3e-36 BH3448 [G] COG1879 ABC-type sugar transport system, periplasmic ... 133 4e-31 mll3407 [G] COG1879 ABC-type sugar transport system, periplasmic... 131 2e-30 >SMc02774 [G] COG1879 ABC-type sugar transport system, periplasmic component Sme Sinorhizobium meliloti Length = 329 Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 112/302 (37%), Positives = 169/302 (55%), Gaps = 16/302 (5%) Query: 20 SAAHAQEVYVPLISKGFQHQFWQAVKAGADQAGKDLKVKVTFEGPETEAMVDKQIDMLSA 79 + + AQ+V +P+I K +WQ V AGA AGKDL V V G ++E+ ++ QI +L Sbjct: 28 ATSFAQDVTIPIIVKDTTSFYWQIVLAGARAAGKDLGVNVPELGAQSESDINGQITILEN 87 Query: 80 ALAKKPQAIGFAALDSKAAIPLLKKAQAAKIPVVAFDSGVDSDIPVTTATTDNRAAAALA 139 A+A P A+ A + KA + +A A +PV+ DSG DS + TTDN +A Sbjct: 88 AVAGAPAAVVIAPTEFKALGKPVDEA-AKSVPVIGIDSGADSKAFTSFLTTDNVQGGRIA 146 Query: 140 ADKMA----ELIGKE-GEVAVVAHDQTSRTGV----DRRDGFLERIKANYPKIKVVSVQY 190 AD +A E GKE GE+AV+ TS GV RR+GFL+++K YP +KVV+ +Y Sbjct: 147 ADGLAAAIKEATGKEEGEIAVI----TSLPGVGSLDQRREGFLDQVKTKYPGLKVVADKY 202 Query: 191 GAGDQLKSTEVTKSILQAYPKIKGIFGTNEGSAIGVVNGVKEMKR--KIIIIGYDSGKQQ 248 G + ++ A P + G+F +N A GV + E K KI +IG+DS ++ Sbjct: 203 ADGQATTGLNIMTDLITANPNLVGVFASNLIMAQGVGQAIAENKLGDKIKVIGFDSDEKT 262 Query: 249 KDAIRDGVMAGAITQNPVGIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDKSNIDDPKIKE 308 +++GV+AG + Q+P +GY V+ A+ KGEK+ +DTG K+N+ +PKI Sbjct: 263 VGFLKEGVLAGLVVQDPYRMGYDGVKTALAVSKGEKVEANVDTGANLVTKANMSEPKIDA 322 Query: 309 VL 310 +L Sbjct: 323 LL 324 >AGc5109 [G] COG1879 ABC-type sugar transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 357 Score = 152 bits (385), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 103/312 (33%), Positives = 163/312 (52%), Gaps = 12/312 (3%) Query: 6 LLAAALGLAFAVGTSAAHAQEVYVPLISKGFQHQFWQAVKAGADQAGKDLKVK-VTFEGP 64 LL +A+ L S + Q + +I K FWQ V+ GAD A K+ +TF+GP Sbjct: 52 LLTSAIAL-----WSVSTVQAGEIAVIVKTVNSTFWQNVQKGADAAMKNSSGNTMTFQGP 106 Query: 65 ETEAMVDKQIDMLSAALAKKPQAIGFAALDSKAAIPLLKKAQAAKIPVVAFDSGV---DS 121 E+ + Q++M+ A+ +K I A D A +P +KKA A+IPVV DS + Sbjct: 107 AAESAIADQVNMVENAINRKVAGIVLAPSDPDALVPAVKKAWEARIPVVLIDSQLAKGSE 166 Query: 122 DIPVTTATTDNRAAAALAADKMAELIGKEGEVAVVAHDQTSRTGVDRRDGFLERIKANYP 181 + TDN+ A LAA + + +G EG++AV+++ + + + R GF + I+ + Sbjct: 167 QYYQSFLATDNKKAGELAAQALIDKVGTEGKIAVMSYVAGAGSEIGRVGGFTDYIQM-HS 225 Query: 182 KIKVVSVQYGAGDQLKSTEVTKSILQAYPKIKGIFGTNEGSAIGVVNGVKEMKR--KIII 239 K+++V Y + T +L A +KGIFG NE +AIGV + + + K+I Sbjct: 226 KLQIVGPFYSQSQMATALNQTTDVLAANSDLKGIFGANEPTAIGVGRALAQSGKAGKVIA 285 Query: 240 IGYDSGKQQKDAIRDGVMAGAITQNPVGIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDKS 299 +G+D + + ++DG +AG + Q +G K VE K I EK+ K +DTG K Sbjct: 286 MGFDGNQDLQSFVKDGTLAGIVVQGSYQMGEKGVETVTKLINKEKVEKFVDTGVVVVTKD 345 Query: 300 NIDDPKIKEVLY 311 NI+ P+ K VLY Sbjct: 346 NIEKPEAKNVLY 357 >mlr3334 [G] COG1879 ABC-type sugar transport system, periplasmic component Mlo Mesorhizobium loti Length = 331 Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 112/312 (35%), Positives = 172/312 (55%), Gaps = 9/312 (2%) Query: 7 LAAALGLAFAVGTSAAHAQEVYVPLISKGFQHQFWQAVKAGADQAGKDLKVKVTFEGPET 66 LAAA LA + ++ A +V +P+I K +WQ V AGA +AGKDL V V G + Sbjct: 16 LAAASILAGVMHSAPVSAADVTIPIIVKDTTSFYWQIVLAGARKAGKDLGVNVPELGAQA 75 Query: 67 EAMVDKQIDMLSAALAKKPQAIGFAALDSKAAIPLLKKAQAAKIPVVAFDSGVDSDIPVT 126 E V+ QI +L A+A P A+ A ++KA + +A AAK+ V+ DSG DS + Sbjct: 76 ETDVNGQISILENAVAGNPAAVVIAPTEAKALGKPIDEA-AAKVKVIGIDSGADSKAFTS 134 Query: 127 TATTDNRAAAALAADKMAELIGK------EGEVAVVAHDQTSRTGVDRRDGFLERIKANY 180 TTDN +AAD +A IG EG+VA++ + + R GF E++KA Y Sbjct: 135 FLTTDNVQGGRVAADGLAAAIGAANGGKVEGKVALITALPGAGSLEQRAQGFKEQLKAKY 194 Query: 181 PKIKVVSVQYGAGDQLKSTEVTKSILQAYPKIKGIFGTNEGSAIGVVNGVKEMKR--KII 238 P +++++ +Y G + ++ A P +KGIF +N A GV + E K K+ Sbjct: 195 PGLELIADKYADGQATTGLNIATDLITANPDLKGIFASNLIMAQGVGQAIAENKLAGKVG 254 Query: 239 IIGYDSGKQQKDAIRDGVMAGAITQNPVGIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDK 298 +IG+DS ++ + DGV++G + Q+P +GY ++ A+ A KGEK+ +DTG K Sbjct: 255 LIGFDSDEKLIKFLNDGVISGLVVQDPYRMGYDGIKTALAASKGEKVEANVDTGANLVTK 314 Query: 299 SNIDDPKIKEVL 310 +N+ DPKI +L Sbjct: 315 ANMKDPKIDALL 326 >BH3448 [G] COG1879 ABC-type sugar transport system, periplasmic component Bha Bacillus halodurans Length = 335 Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 132/255 (51%), Gaps = 6/255 (2%) Query: 40 FWQAVKAGADQAGKDLKVKVTFEGPETEAMVDKQIDMLSAALAKKPQAIGFAALDSKAAI 99 +W+ G + A + L V V + G + + +QI +L A+AK P I +A+D Sbjct: 56 YWKRCLKGFEDAAQALNVTVEYRGA-AQYDIQEQITVLEQAIAKNPAGIAISAIDPVELT 114 Query: 100 PLLKKAQAAKIPVVAFDSGVDSDIPVTTATTDNRAAAALAADKMAELIGKEGEVAVVA-H 158 + KA A IP+V FDSG + T+N A AA KMAEL+ EGEVAV+ Sbjct: 115 DTINKAVDAGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLP 174 Query: 159 DQTSRTGVDRRDGFLERIKANYPKIKVVSVQYGAGDQLKSTEVTKSILQAYPKIKGIFGT 218 +Q + +R GF E ++A +P I+V++V+ G GD L S V +L+ YP + GIF T Sbjct: 175 NQLNHQ--ERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFAT 232 Query: 219 NEGSAIGVVNGVKEMKR--KIIIIGYDSGKQQKDAIRDGVMAGAITQNPVGIGYKTVEAA 276 +GV + V+ R +I II +D+ K D + +G+++ + Q +GY ++ Sbjct: 233 EANGGVGVGDAVRLESRAGEIQIISFDTDKGTLDLVDEGIISATLAQGTWNMGYWSLTYL 292 Query: 277 VKAIKGEKLPKVIDT 291 G P+++ T Sbjct: 293 FHLHHGLTEPQILQT 307 >mll3407 [G] COG1879 ABC-type sugar transport system, periplasmic component Mlo Mesorhizobium loti Length = 325 Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 142/285 (49%), Gaps = 16/285 (5%) Query: 40 FWQAVKAGADQAGKDLKVKVTFEG-PETEAMVDKQIDMLSAALAKKPQAIGFAALDSKAA 98 F+ ++ GA A L V + F+G P+ + Q+ +L A +AKKP AI A D Sbjct: 42 FYITMRKGAQAAADALGVNLVFQGAPDFNPVT--QVPVLDAVIAKKPDAILIAPTDKVQL 99 Query: 99 IPLLKKAQAAKIPVVAFD----SGV------DSDIPVTTATTDNRAAAALAADKMAELIG 148 + L+KA A IPV+ D SGV D+D P+ +DN +AA +A IG Sbjct: 100 VEPLRKANDAGIPVITVDTFIGSGVYQTGAGDADFPLAYIASDNVLGGEIAARALATAIG 159 Query: 149 KEGEVAVVAHDQTSRTGVDRRDGFLERIKANYPKIKVVSVQYGAGDQLKSTEVTKSILQA 208 +G+V V T R +GF + + A + I V+ Q+ D K+ +++ Sbjct: 160 DKGKVYVSNVKPGISTTDQREEGFKKEM-AKHSGITVLETQFNDDDANKAASQLQAVFAR 218 Query: 209 YPKIKGIFGTNEGSAIGVVNGVKEMKRK--IIIIGYDSGKQQKDAIRDGVMAGAITQNPV 266 P + G+FG N SA+G NGVK+ + + ++ +D+ D I G++ AI Q+P Sbjct: 219 NPDLVGVFGANLFSALGAANGVKQAGQTGTVKVVAFDAPTSIVDNINTGLVDVAIAQHPA 278 Query: 267 GIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDKSNIDDPKIKEVLY 311 IGY V +A + G +P I TGF DKSNI DP I + LY Sbjct: 279 EIGYYGVVSAYAHLTGHSIPVTIGTGFTIMDKSNIADPNISKYLY 323