BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0053.p (333 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VCA0129 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 233 5e-61 PM1327 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 226 6e-59 BH3731 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 226 6e-59 BS_rbsC [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 225 9e-59 L83296 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 225 1e-58 >VCA0129 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Vch Vibrio cholerae Length = 332 Score = 233 bits (594), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 142/328 (43%), Positives = 208/328 (63%), Gaps = 13/328 (3%) Query: 1 MANTASPSGLRARLFNPAARQKLLAFASLLLMILFFSFASPNFMEVDNLVSILQSTAVNG 60 M NT S + R +L + + + +LL +++ SF +PNF VDNL++IL+ T+VN Sbjct: 12 MTNTTSDN--RKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNA 69 Query: 61 VLAIACTYVIITSGIDLSVGTMMTFCAVMAGVVLTNWGMPLPLGIAAAIFFGALSGWVSG 120 ++A+ T VI+T+GIDLSVG+++ C A L +P+ + + A+ GA G +SG Sbjct: 70 IIAVGMTLVILTAGIDLSVGSVLALCGAFAAT-LVAMEVPVLVAVPTALLAGAALGAISG 128 Query: 121 MVIAKLKVPPFIATLGMMMLLKGLSLVISGTRPIY--FNDT-EGFSAIAQDSLIGDLIPS 177 ++IAK KV FIATL M LL+G+++V + RPI F DT + F+ +G Sbjct: 129 IIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLG----- 183 Query: 178 LPIPNAVLILFIVAIGASVILNKTVFGRYTFALGSNEEALRLSGVKVDFWKVAVYTFSGA 237 +P+P V ++ +V GA +LN T FGRY +A+G NE A RLSG+ VD K+ VY G Sbjct: 184 IPVP--VWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGL 241 Query: 238 ICGIAGLIIASRLNSAQPALGQGYELDAIAAVVIGGTSLSGGTGTILGTIIGAFIMSVLV 297 + +AG+I+ SRL+SAQP G GYELDAIAAVV+GGTSL GG G I+GT+IGA I+ L Sbjct: 242 LAALAGIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLN 301 Query: 298 NGLRIMSVAQEWQTVVTGIIIILAVYLD 325 N L ++ V+ +Q + ++I+LAV +D Sbjct: 302 NALNLLDVSSYYQMIAKAVVILLAVLVD 329 >PM1327 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Pmu Pasteurella multocida Length = 347 Score = 226 bits (576), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 136/308 (44%), Positives = 194/308 (62%), Gaps = 20/308 (6%) Query: 37 SFASPNFMEVDNLVSILQSTAVNGVLAIACTYVIITSGIDLSVGTMMTFCAVMAGVVLTN 96 S +S F+ +N+++IL ++ V+++ TYVI+T GIDLSVG+++ AV GV T+ Sbjct: 30 SLSSDVFLSTNNIINILLQVSIICVISVGMTYVILTGGIDLSVGSIVALSAVCLGV-FTH 88 Query: 97 WGMP--------------LPLGIAAAIFFGALSGWVSGMVIAKLKVPPFIATLGMMMLLK 142 WGM + I A IF G L G+V+G+VI KV PFI TLGMM + + Sbjct: 89 WGMDWLGENPSSFSVLMIVISAIIATIFVGILCGYVNGLVIVYGKVTPFITTLGMMGIAR 148 Query: 143 GLSLVISGTRPIY-FNDTEGFSAIAQDSLIGDLIPSLPIPNAVLILFIVAIGASVILNKT 201 GL+L IS + IY F DT F + +L +LP+P V+I +V + + +L +T Sbjct: 149 GLALTISDGKTIYNFPDTLRFLGNGRIALTETF--ALPVP--VIIALLVVLVSFYVLTQT 204 Query: 202 VFGRYTFALGSNEEALRLSGVKVDFWKVAVYTFSGAICGIAGLIIASRLNSAQPALGQGY 261 +FGR +ALG N EA+RLSG+ ++ ++ Y +GA+ I +I+ RLN+AQP G GY Sbjct: 205 MFGRQIYALGGNREAVRLSGINIEKLEIKAYVINGALAAIGAIILVGRLNAAQPIAGNGY 264 Query: 262 ELDAIAAVVIGGTSLSGGTGTILGTIIGAFIMSVLVNGLRIMSVAQEWQTVVTGIIIILA 321 ELDAIAA VIGGTSL GG G+++ T IGA IM VL NGL +++V Q ++ G++IILA Sbjct: 265 ELDAIAATVIGGTSLMGGVGSVVSTSIGALIMGVLQNGLTLLNVTSYLQRLIIGLVIILA 324 Query: 322 VYLDILRR 329 V+LD LRR Sbjct: 325 VFLDQLRR 332 >BH3731 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Bha Bacillus halodurans Length = 314 Score = 226 bits (576), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 131/309 (42%), Positives = 199/309 (64%), Gaps = 12/309 (3%) Query: 26 FASLLLMILFFSFASPNFMEVDNLVSILQSTAVNGVLAIACTYVIITSGIDLSVGTMMTF 85 F L ++L SF +P+F+ + N++++L+ ++N ++A T+VI+T GIDLSVG ++ Sbjct: 17 FIGLFFIVLIISFLNPDFLSLSNIMNVLRQVSINALIAFGMTFVILTGGIDLSVGAILAL 76 Query: 86 CAVMAGVVLTNWGMPLPLGIAAAIFFGALSGWVSGMVIAKLKVPPFIATLGMMMLLKGLS 145 + + ++ N P+ L + + G L G ++G+VI+K KV PFIATL M + +GL+ Sbjct: 77 SSAVTAWLMVNSVDPI-LAVLIGLLAGTLFGAINGLVISKGKVAPFIATLATMTIYRGLT 135 Query: 146 LVISGTRPIY-FNDTEGFSAIAQDSLIGDLIPSLPIPNAVLILFIVAIGASVILNKTVFG 204 LV + RPI F + F + + G +P++ + + +IL++ IL KT FG Sbjct: 136 LVFTDGRPISGFESSTMFEMLGRGYFFGIPVPAVTMIISFIILYL-------ILKKTTFG 188 Query: 205 RYTFALGSNEEALRLSGVKVDFWKVAVYTFSGAICGIAGLIIASRLNSAQPALGQGYELD 264 R +A+G N+EA LSG+KVD K+ VY+ +G + +AG+I+ SRL SAQP G YELD Sbjct: 189 RRVYAVGGNQEAAILSGIKVDRIKIYVYSLTGFLSALAGMILTSRLYSAQPTAGSMYELD 248 Query: 265 AIAAVVIGGTSLSGGTGTILGTIIGAFIMSVLVNGLRIMSVAQEWQTVVTGIIIILAVYL 324 AIAAVV+GGTSL+GG G I+GT+IGA I+ VL NGL ++ V+ +Q VV G +I+LAV L Sbjct: 249 AIAAVVLGGTSLTGGRGWIVGTLIGALIIGVLNNGLNLLGVSSFFQQVVKGSVILLAVLL 308 Query: 325 DILRRRRRA 333 D RR+ A Sbjct: 309 D---RRKSA 314 >BS_rbsC [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Bsu Bacillus subtilis Length = 322 Score = 225 bits (574), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 134/325 (41%), Positives = 208/325 (64%), Gaps = 14/325 (4%) Query: 11 RARLFNPAARQKLLAFASLLLMILFFSFASPNFMEVDNLVSILQSTAVNGVLAIACTYVI 70 + R+ QKL F L ++++ S +P+F+E N++++L+ A+NG++A T+VI Sbjct: 10 QKRIHFDGVMQKLGPFLGLFILVIIVSILNPSFLEPLNILNLLRQVAINGLIAFGMTFVI 69 Query: 71 ITSGIDLSVGTMMTFC-AVMAGVVLTNWGMPLPLGIAAAIFFGALSGWVSGMVIAKLKVP 129 +T GIDLSVG ++ A++AG++++ G+ L I GA+ G ++G++I K K+ Sbjct: 70 LTGGIDLSVGAILALSSALVAGMIVS--GVDPVLAIILGCIIGAVLGMINGLLITKGKMA 127 Query: 130 PFIATLGMMMLLKGLSLVISGTRPIY-FNDTEGFSAIAQDSLIGDLIPSLPIPNAVLILF 188 PFIATL M + +GL+LV + PI GF + +G +P++ + A +IL+ Sbjct: 128 PFIATLATMTVFRGLTLVYTDGNPITGLGTNYGFQMFGRGYFLGIPVPAITMVLAFVILW 187 Query: 189 IVAIGASVILNKTVFGRYTFALGSNEEALRLSGVKVDFWKVAVYTFSGAICGIAGLIIAS 248 V+L+KT FGR T+A+G NE+A +SG+KV KV +Y+ +G + +AG I+ S Sbjct: 188 -------VLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTS 240 Query: 249 RLNSAQPALGQGYELDAIAAVVIGGTSLSGGTGTILGTIIGAFIMSVLVNGLRIMSVAQE 308 RL+SAQP G+ YELDAIAAVV+GGTSLSGG G I+GT+IG I+ L NGL ++ V+ Sbjct: 241 RLHSAQPTAGESYELDAIAAVVLGGTSLSGGRGRIVGTLIGVLIIGTLNNGLNLLGVSSF 300 Query: 309 WQTVVTGIIIILAVYLDILRRRRRA 333 +Q VV GI+I++AV LD R++ A Sbjct: 301 YQLVVKGIVILIAVLLD---RKKSA 322 >L83296 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Lla Lactococcus lactis Length = 313 Score = 225 bits (573), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 134/307 (43%), Positives = 202/307 (65%), Gaps = 11/307 (3%) Query: 28 SLLLMILFFSFASPNFMEVDNLVSILQSTAVNGVLAIACTYVIITSGIDLSVGTMMTFC- 86 +L+++++ + +PNFM +NL+++L NG +A T+VI+TSGIDLSVG ++ Sbjct: 16 ALIVLMIIITCINPNFMTANNLLNLLLQVTANGFIAFGMTFVILTSGIDLSVGAILALSS 75 Query: 87 AVMAGVVLTNWGMPLPLGIAAAIFFGALSGWVSGMVIAKLKVPPFIATLGMMMLLKGLSL 146 AV AG + GMPLPL + A+ GA G ++G +IA K+ PFI TL M+ +G +L Sbjct: 76 AVSAGFI--AQGMPLPLAVVCALIIGAFLGAINGALIAYGKLAPFIVTLATQMVYRGATL 133 Query: 147 VISGTRPIYFN-DTEGFSAIAQDSLIGDLIPSLPIPNAVLILFIVAIGASVILNKTVFGR 205 V + PI + D + I Q L+G IP V+++ +V I ++L+KT FG+ Sbjct: 134 VFTDGNPITKHMDGYFLAYIGQGYLLG-------IPFPVILMILVFIVLWILLHKTAFGK 186 Query: 206 YTFALGSNEEALRLSGVKVDFWKVAVYTFSGAICGIAGLIIASRLNSAQPALGQGYELDA 265 +ALG NE+A +SG+K++ K+A+YT SGA+ I+GLII+SRL+SA P G GYE+ A Sbjct: 187 SVYALGGNEKAAYISGIKLNKVKIAIYTLSGAMSAISGLIISSRLSSATPQAGSGYEMYA 246 Query: 266 IAAVVIGGTSLSGGTGTILGTIIGAFIMSVLVNGLRIMSVAQEWQTVVTGIIIILAVYLD 325 IAAVV+GGTSL GG G + GT+IG I+ VL NGL I+ V+ WQ V+ G++I++AV +D Sbjct: 247 IAAVVLGGTSLMGGKGRMFGTMIGVLIIGVLNNGLNIIGVSAFWQQVIQGLVILVAVLID 306 Query: 326 ILRRRRR 332 ++R +R+ Sbjct: 307 VIRSKRK 313