BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0052.p         (140 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TM0115 [G] COG1129 ABC-type sugar transport system, ATPase compo...   145   3e-35
AGc5112 [G] COG1129 ABC-type sugar transport system, ATPase comp...   142   2e-34
BH2322 [G] COG1129 ABC-type sugar transport system, ATPase compo...   142   3e-34
SMb20713 [G] COG1129 ABC-type sugar transport system, ATPase com...   137   9e-33
AGl2903 [G] COG1129 ABC-type sugar transport system, ATPase comp...   137   9e-33

>TM0115 [G] COG1129 ABC-type sugar transport system, ATPase component Tma
           Thermotoga maritima
          Length = 520

 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/134 (53%), Positives = 98/134 (73%), Gaps = 7/134 (5%)

Query: 1   MDQRAIREVAQGYVRQLAIKTPSVEQQAHPQKPPLLSGGNQQKIVIAKWLLRDCDILFFD 60
           +D+R   E+++ YV++L+IKTPS+ Q         LSGGNQQK+V+AKWL  + DIL FD
Sbjct: 382 LDERKEEEISEDYVKRLSIKTPSIYQITEN-----LSGGNQQKVVLAKWLATNADILIFD 436

Query: 61  EPTRGIDIGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRILVMCEGRVTGELARA 120
           EPTRGID+GAK+EI++++  LA QGKA++MISSELPE+L +S RI+VM EG +T  L   
Sbjct: 437 EPTRGIDVGAKAEIHRMIRELAAQGKAVIMISSELPEILNLSDRIVVMWEGEITAVLDNR 496

Query: 121 D--ATQENIMQLAT 132
           +   TQE IM  A+
Sbjct: 497 EKRVTQEEIMYYAS 510



 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 61/100 (61%)

Query: 36  LSGGNQQKIVIAKWLLRDCDILFFDEPTRGIDIGAKSEIYKLLDALAEQGKAIVMISSEL 95
           L+   +Q + I K L+++  I+F DEPT  + +     ++++++ L  +G ++V +S  L
Sbjct: 157 LTTAQRQMVEICKALVKEPRIIFMDEPTSSLTVEETERLFEIIEMLKSRGISVVFVSHRL 216

Query: 96  PEVLRMSHRILVMCEGRVTGELARADATQENIMQLATQRE 135
            EV+R+S RI+VM +G+  GEL + +   + I+++   RE
Sbjct: 217 DEVMRISDRIVVMRDGKRIGELKKGEFDVDTIIKMMVGRE 256


>AGc5112 [G] COG1129 ABC-type sugar transport system, ATPase component Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 521

 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/132 (53%), Positives = 92/132 (69%), Gaps = 5/132 (3%)

Query: 1   MDQRAIREVAQGYVRQLAIKTPSVEQQAHPQKPPLLSGGNQQKIVIAKWLLRDCDILFFD 60
           +D +   +VA+ YV  L I+TPS++Q        LLSGGNQQKI+I KWL R   +LFFD
Sbjct: 388 IDFKKHDDVAKRYVDLLNIRTPSIDQTVR-----LLSGGNQQKIIIGKWLFRQSRVLFFD 442

Query: 61  EPTRGIDIGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRILVMCEGRVTGELARA 120
           EPTRGID+GAK  IYK++D LA QG  +++ISSELPE+L ++ RI V  +GR+TG L  A
Sbjct: 443 EPTRGIDVGAKFAIYKIMDELAAQGIGVILISSELPEILGLTDRIAVFHQGRITGVLETA 502

Query: 121 DATQENIMQLAT 132
              QE IM+ A+
Sbjct: 503 KTNQEEIMRYAS 514


>BH2322 [G] COG1129 ABC-type sugar transport system, ATPase component Bha
           Bacillus halodurans
          Length = 522

 Score =  142 bits (357), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/132 (55%), Positives = 98/132 (74%), Gaps = 5/132 (3%)

Query: 1   MDQRAIREVAQGYVRQLAIKTPSVEQQAHPQKPPLLSGGNQQKIVIAKWLLRDCDILFFD 60
           ++ + +++  +   ++L IKTPS+EQ         LSGGNQQK+++A+WLL++ DILF D
Sbjct: 369 LNGKRVKKDCEQQKQKLYIKTPSIEQIVEN-----LSGGNQQKVLLARWLLKNPDILFLD 423

Query: 61  EPTRGIDIGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRILVMCEGRVTGELARA 120
           EPTRGID+GAKSE Y L+  LA QGKAIV++SSE+ E+L +  RILVM EG+VTGEL R 
Sbjct: 424 EPTRGIDVGAKSEFYNLIFELASQGKAIVVVSSEMAEILGLCDRILVMHEGKVTGELTRE 483

Query: 121 DATQENIMQLAT 132
           +A QE IMQ AT
Sbjct: 484 EANQEKIMQYAT 495


>SMb20713 [G] COG1129 ABC-type sugar transport system, ATPase component Sme
           Sinorhizobium meliloti
          Length = 506

 Score =  137 bits (344), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 68/133 (51%), Positives = 96/133 (72%), Gaps = 5/133 (3%)

Query: 1   MDQRAIREVAQGYVRQLAIKTPSVEQQAHPQKPPLLSGGNQQKIVIAKWLLRDCDILFFD 60
           + +R +    +   R+L +KTP+++++        LSGGNQQK++I +WLL +  IL  D
Sbjct: 379 VSEREVTAACEEMSRKLRVKTPNLQERVEN-----LSGGNQQKVLIGRWLLTNPRILILD 433

Query: 61  EPTRGIDIGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRILVMCEGRVTGELARA 120
           EPTRGID+GAK+EI++L+  LA  G A++MISSE+PEVL MS RI+VM EGRVTG L RA
Sbjct: 434 EPTRGIDVGAKAEIHRLVTELARNGVAVIMISSEMPEVLGMSDRIMVMHEGRVTGILDRA 493

Query: 121 DATQENIMQLATQ 133
           +ATQ  +M+LA +
Sbjct: 494 EATQIKVMELAAR 506


>AGl2903 [G] COG1129 ABC-type sugar transport system, ATPase component Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 528

 Score =  137 bits (344), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 95/131 (72%), Gaps = 5/131 (3%)

Query: 3   QRAIREVAQGYVRQLAIKTPSVEQQAHPQKPPLLSGGNQQKIVIAKWLLRDCDILFFDEP 62
           + A+ E  +   R+L +KTP + ++        LSGGNQQK++I +W+L    IL  DEP
Sbjct: 403 ENALSEACEEMCRKLRVKTPHLYERIEN-----LSGGNQQKVLIGRWMLTKPRILILDEP 457

Query: 63  TRGIDIGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRILVMCEGRVTGELARADA 122
           TRGID+GAK+EI+KL+  +A QG A++MISSE+PEVL MS R++VM EGRVTG LAR++A
Sbjct: 458 TRGIDVGAKAEIHKLVCEMARQGVAVIMISSEMPEVLGMSDRVMVMHEGRVTGFLARSEA 517

Query: 123 TQENIMQLATQ 133
           TQ  +M LA++
Sbjct: 518 TQVKVMDLASR 528