BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0046.p         (198 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI1717 [K] COG1414 Transcriptional regulator Bme Brucella meli...   160   2e-39
AGl810 [K] COG1414 Transcriptional regulator Atu Agrobacterium t...   158   6e-39
mlr7155 [K] COG1414 Transcriptional regulator Mlo Mesorhizobium ...   157   2e-38
SMb21102 [K] COG1414 Transcriptional regulator Sme Sinorhizobium...   157   2e-38
PA3508 [K] COG1414 Transcriptional regulator Pae Pseudomonas aer...    64   1e-10

>BMEI1717 [K] COG1414 Transcriptional regulator Bme Brucella melitensis
          Length = 264

 Score =  160 bits (405), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/151 (53%), Positives = 105/151 (69%), Gaps = 1/151 (0%)

Query: 31  RYAAPALDKGLDILELLSRSEQMLTLNQISRQLGRSVNEIFRMVVTLEQRGYLVA-DNDH 89
           RY APALDKGLDILELL+  +  LT  +I++ L RS NE +RM+  L +RGY+   D D 
Sbjct: 11  RYRAPALDKGLDILELLASVDGGLTQAEIAKHLDRSPNEFYRMLDRLVKRGYVTKLDGDR 70

Query: 90  YRLSLKLFELAHHHQPIRSLVSTALPHMRELANRSMQSTHLTVYEAGRVIVVAQVDSPER 149
           Y L+LKLF LA  H P+R L S A P MRELA+RS Q+  L V++ G V+V+AQ ++P+ 
Sbjct: 71  YSLTLKLFGLAQLHAPVRRLASFATPFMRELADRSKQANQLAVFDRGSVVVIAQQEAPDY 130

Query: 150 WAFGLKVGALVSLTDTASGHVLLAFRDEAER 180
           W   ++VG+ +SL DT SGHVLLAFR   ER
Sbjct: 131 WGISIRVGSHISLFDTGSGHVLLAFRSPEER 161


>AGl810 [K] COG1414 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 255

 Score =  158 bits (400), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 80/151 (52%), Positives = 109/151 (72%), Gaps = 1/151 (0%)

Query: 31  RYAAPALDKGLDILELLSRSEQMLTLNQISRQLGRSVNEIFRMVVTLEQRGYLV-ADNDH 89
           RY APALDKGLDILELL+R++  LT  +I++ +G+S NE++RM+  L +RGY+   D D 
Sbjct: 8   RYRAPALDKGLDILELLARTDGGLTQIEIAKAIGKSPNELYRMLDRLVRRGYVQRLDGDR 67

Query: 90  YRLSLKLFELAHHHQPIRSLVSTALPHMRELANRSMQSTHLTVYEAGRVIVVAQVDSPER 149
           + L+LK+F LAH H PIR LVS A P MR+ +  + Q+ HL VY+ G V+V+AQ +S   
Sbjct: 68  FSLTLKMFGLAHFHAPIRRLVSFAAPVMRDFSASAEQACHLAVYDRGSVVVIAQQESATY 127

Query: 150 WAFGLKVGALVSLTDTASGHVLLAFRDEAER 180
           WA  ++VGA +SL  T SGHVLLAF+ EA+R
Sbjct: 128 WAMSMRVGAQMSLFHTGSGHVLLAFQTEAQR 158


>mlr7155 [K] COG1414 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 261

 Score =  157 bits (396), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/151 (52%), Positives = 104/151 (68%), Gaps = 1/151 (0%)

Query: 31  RYAAPALDKGLDILELLSRSEQMLTLNQISRQLGRSVNEIFRMVVTLEQRGYLV-ADNDH 89
           RY APALDKGLDILELL+  +  LT  +I+++L RS NE +RM+  L +RGY+   D D 
Sbjct: 8   RYRAPALDKGLDILELLAGVDGGLTQAEIAKKLDRSPNEFYRMLDRLVRRGYVTRLDGDR 67

Query: 90  YRLSLKLFELAHHHQPIRSLVSTALPHMRELANRSMQSTHLTVYEAGRVIVVAQVDSPER 149
           Y L+LKLF LA  H P+R LVS A P MRELA  S Q+  L V++ G  +V+AQ ++P  
Sbjct: 68  YSLTLKLFGLAQLHAPVRRLVSYATPLMRELAETSQQANQLVVFDRGSAVVIAQQEAPNY 127

Query: 150 WAFGLKVGALVSLTDTASGHVLLAFRDEAER 180
           W   ++VG+ +SL DT SGHVLLAFR + ER
Sbjct: 128 WGISIRVGSHISLFDTGSGHVLLAFRSQEER 158


>SMb21102 [K] COG1414 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 260

 Score =  157 bits (396), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/162 (51%), Positives = 108/162 (66%), Gaps = 6/162 (3%)

Query: 20  DHEEDSAAGKTRYAAPALDKGLDILELLSRSEQMLTLNQISRQLGRSVNEIFRMVVTLEQ 79
           D+EE       +Y APALDKGLDILELL+  +  LT  +IS++L RS NE +RM+  L +
Sbjct: 2   DNEESD-----KYRAPALDKGLDILELLASVDGGLTQAEISKRLNRSPNEFYRMLDRLVR 56

Query: 80  RGYLV-ADNDHYRLSLKLFELAHHHQPIRSLVSTALPHMRELANRSMQSTHLTVYEAGRV 138
           RGY+   D D Y L+LKLF LA  H P+R L S A P MRELA RS Q+  L V++ G  
Sbjct: 57  RGYVTRIDGDLYSLTLKLFGLAQLHAPVRRLASFATPLMRELAQRSKQANQLAVFDRGSA 116

Query: 139 IVVAQVDSPERWAFGLKVGALVSLTDTASGHVLLAFRDEAER 180
           +V+AQ ++P+ W   ++VG+ +SL DT SGHVLLAFR   ER
Sbjct: 117 VVIAQQEAPDYWGISIRVGSHISLFDTGSGHVLLAFRSPEER 158


>PA3508 [K] COG1414 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 277

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 3/153 (1%)

Query: 20  DHEEDSAAGKTRYAAPALDKGLDILELLSRSEQMLTLNQISRQLGRSVNEIFRMVVTLEQ 79
           D  +DS   + +Y  P L++GL +L   SR ++ LT  +++R+L    + IFR++ TLE 
Sbjct: 2   DKSDDS---QDKYIVPGLERGLLLLCEFSRKDRTLTAPELARRLKLPRSTIFRLLTTLEA 58

Query: 80  RGYLVADNDHYRLSLKLFELAHHHQPIRSLVSTALPHMRELANRSMQSTHLTVYEAGRVI 139
            G++  + + YRL + +  L   +     L     P +  L +      +L V +   ++
Sbjct: 59  MGFVTRNGNEYRLGMAVLRLGFEYLASLELTELGQPLLNRLCDEIRYPCNLVVRDGRSIV 118

Query: 140 VVAQVDSPERWAFGLKVGALVSLTDTASGHVLL 172
            VA+V      +  + VG  +    T  G +LL
Sbjct: 119 YVAKVSPSTPLSSSVNVGTRLPAHATVLGRILL 151