BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0038.p (403 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0362 [G] COG4214 ABC-type xylose transport system, permease... 521 e-147 AGc4262 [G] COG4214 ABC-type xylose transport system, permease c... 489 e-138 SMb20893 [G] COG4214 ABC-type xylose transport system, permease ... 469 e-132 mll5656 [G] COG4214 ABC-type xylose transport system, permease c... 437 e-122 BH3440 [G] COG4214 ABC-type xylose transport system, permease co... 415 e-116 >BMEII0362 [G] COG4214 ABC-type xylose transport system, permease component Bme Brucella melitensis Length = 396 Score = 521 bits (1342), Expect = e-147, Method: Compositional matrix adjust. Identities = 266/389 (68%), Positives = 315/389 (80%), Gaps = 5/389 (1%) Query: 18 EKKDYGSFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPLNLTNLVLQNSYIVIMALGM 77 ++ G +LKNN+RE GML+SLVAIM FF I+T G LM+PLNLTNLVLQNSYIVIMALGM Sbjct: 10 QQSSVGRYLKNNLRESGMLLSLVAIMIFFHIVTGGVLMKPLNLTNLVLQNSYIVIMALGM 69 Query: 78 LMVIVAGHIDLSVGSVVGLIGALAAVLMVDYGWGFVPASIVCLIAGALIGAAQGYWIAYF 137 L++IV GHIDLSVGSV G IGALAAV+MV G F A+I+CLI G LIGA QG+W+AYF Sbjct: 70 LLIIVTGHIDLSVGSVCGFIGALAAVMMVKLGIPFPIAAILCLIVGGLIGAIQGFWVAYF 129 Query: 138 KIPSFIVTLAGMLVFKGMALALLQGQSLGPFPQTFQMLSSGFIPELTDNTTFR---TTSL 194 IPSFIVTLAGMLVFKG+ LA+L GQS+GPFP FQ LSSGFIPE+ TF TSL Sbjct: 130 NIPSFIVTLAGMLVFKGLMLAVLGGQSVGPFPVVFQKLSSGFIPEVIG--TFDGVYLTSL 187 Query: 195 IVGIIAAVVLILVKLHGRRKQTKHGMEDEPAMFFLLKNGVFAIAIIAFSYLLSTYRGMPN 254 I+G++ AV LI + R + H +E EP F++K ++ +AI S L+S++RGMPN Sbjct: 188 IIGVLLAVFLIWQSMRSRARHIAHEVETEPFGLFVVKCILYFVAIAYLSLLISSHRGMPN 247 Query: 255 VLIIMFALMVLYTFITSRTTLGRRVYAVGGNEKAAKLSGIKTERVSFFTFVNMGVLAALA 314 VLIIM L+ Y F+T+RT +GR++YAVGGN AAKLSG+KTER++F TFVNMGVLAALA Sbjct: 248 VLIIMAVLIAAYAFLTNRTVIGRQIYAVGGNRHAAKLSGVKTERLTFLTFVNMGVLAALA 307 Query: 315 GLIFAARLNTATPKAGLGFELDVIAACFIGGASASGGVGKVMGAVIGAFIMGVMNNGMSI 374 GL+FAARLNTATPKAG+GFELDVIAACFIGGASA GGVG+V GAVIGA IMGVMNNGMSI Sbjct: 308 GLVFAARLNTATPKAGIGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSI 367 Query: 375 MGIGIDYQQMIKGLVLLMAVCFDVYNKNK 403 +GIGIDYQQ+IKG+VLL AVC DVYN+ + Sbjct: 368 LGIGIDYQQVIKGIVLLGAVCIDVYNQKR 396 >AGc4262 [G] COG4214 ABC-type xylose transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 398 Score = 489 bits (1258), Expect = e-138, Method: Compositional matrix adjust. Identities = 251/381 (65%), Positives = 314/381 (82%) Query: 23 GSFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPLNLTNLVLQNSYIVIMALGMLMVIV 82 GS++++N+REYGML++LVAIM FFQ T G L RP+NLTNL+LQNS+IVIMALGML+VIV Sbjct: 17 GSYIRSNIREYGMLIALVAIMVFFQFYTGGILFRPVNLTNLILQNSFIVIMALGMLLVIV 76 Query: 83 AGHIDLSVGSVVGLIGALAAVLMVDYGWGFVPASIVCLIAGALIGAAQGYWIAYFKIPSF 142 AGHIDLSVGS+V +GA+AA+L V +G A+++CL+ G +IGAAQGYWIAY +IPSF Sbjct: 77 AGHIDLSVGSIVAFVGAIAAILTVQWGMNPFLAALICLVIGGIIGAAQGYWIAYHRIPSF 136 Query: 143 IVTLAGMLVFKGMALALLQGQSLGPFPQTFQMLSSGFIPELTDNTTFRTTSLIVGIIAAV 202 IVTLAGMLVF+G+ L +L G+++GPFP FQ++S+GF+P++ TTS+I+ ++ V Sbjct: 137 IVTLAGMLVFRGLTLFVLGGKNIGPFPTDFQVISTGFLPDIGGIEGLNTTSMILTVLITV 196 Query: 203 VLILVKLHGRRKQTKHGMEDEPAMFFLLKNGVFAIAIIAFSYLLSTYRGMPNVLIIMFAL 262 L + R KHG++ EP FF+++N + + AI+ Y LSTYRG+PNVLI+M L Sbjct: 197 ALFYLAWRRRVVNVKHGIDVEPFGFFIVQNLLISGAILFLGYQLSTYRGLPNVLIVMLVL 256 Query: 263 MVLYTFITSRTTLGRRVYAVGGNEKAAKLSGIKTERVSFFTFVNMGVLAALAGLIFAARL 322 + LY+F+T RTT+GRRVYA+GGNEKA KLSGI TER+SF TFVNMGVLA LAG+I A RL Sbjct: 257 IALYSFVTRRTTIGRRVYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRL 316 Query: 323 NTATPKAGLGFELDVIAACFIGGASASGGVGKVMGAVIGAFIMGVMNNGMSIMGIGIDYQ 382 N+ATPKAG+GFELDVIAACFIGGASASGGVGK+ GAVIGAFIMGVMNNGMSI+G+GID+Q Sbjct: 317 NSATPKAGVGFELDVIAACFIGGASASGGVGKITGAVIGAFIMGVMNNGMSIVGLGIDFQ 376 Query: 383 QMIKGLVLLMAVCFDVYNKNK 403 QM+KGLVLL AV FDVYNKNK Sbjct: 377 QMVKGLVLLAAVFFDVYNKNK 397 >SMb20893 [G] COG4214 ABC-type xylose transport system, permease component Sme Sinorhizobium meliloti Length = 404 Score = 469 bits (1208), Expect = e-132, Method: Compositional matrix adjust. Identities = 247/402 (61%), Positives = 315/402 (78%), Gaps = 12/402 (2%) Query: 11 AVASGAVEKKDYGSFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPLNLTNLVLQNSYI 70 A S K G +L+NN+REYG+L++LV IM FFQ +T+G L RP+N+TNLVLQNS+I Sbjct: 3 ADTSTETTKPSIGDYLRNNIREYGLLVALVIIMLFFQFVTNGVLFRPVNITNLVLQNSFI 62 Query: 71 VIMALGMLMVIVAGHIDLSVGSVVGLIGALAAVLMVDYGWGFVPASIV---CLIAGALIG 127 VIMALGML++IVAGHIDLSVGS+V IGA++A+++V +G +PA +V CLI G ++G Sbjct: 63 VIMALGMLLIIVAGHIDLSVGSIVAFIGAISAIMLVKWG---LPAFVVIPACLIVGGIMG 119 Query: 128 AAQGYWIAYFKIPSFIVTLAGMLVFKGMALALLQGQSLGPFPQTFQMLSSGFIPEL---- 183 AAQGYW+AY KIPSFIVTLAGMLVF+GM +L G+ +GPFP+ FQ+LS+GF+P+ Sbjct: 120 AAQGYWVAYQKIPSFIVTLAGMLVFRGMTYVVLGGRPIGPFPKDFQILSTGFVPDFLYFL 179 Query: 184 --TDNTTFRTTSLIVGIIAAVVLILVKLHGRRKQTKHGMEDEPAMFFLLKNGVFAIAIIA 241 + T +L+ ++ I + RR +HG E+EP +FF ++ V ++ + Sbjct: 180 SPSPETIKNMVALVAVLLLVGYAIFAGVRNRRINEQHGTENEPFVFFAIQMAVISLVALF 239 Query: 242 FSYLLSTYRGMPNVLIIMFALMVLYTFITSRTTLGRRVYAVGGNEKAAKLSGIKTERVSF 301 + LSTYRG+PNVL++M L+ +YTF+T+R+T+GRR+YA+GGNEKA KLSGI TER++F Sbjct: 240 LGFQLSTYRGLPNVLVVMGVLIAVYTFVTTRSTIGRRIYAMGGNEKATKLSGINTERLTF 299 Query: 302 FTFVNMGVLAALAGLIFAARLNTATPKAGLGFELDVIAACFIGGASASGGVGKVMGAVIG 361 + FVNMG LAALAG+I ARLN+ATPKAG+GFELDVIAACFIGGASASGGVGK+ GAVIG Sbjct: 300 YAFVNMGALAALAGMIITARLNSATPKAGVGFELDVIAACFIGGASASGGVGKITGAVIG 359 Query: 362 AFIMGVMNNGMSIMGIGIDYQQMIKGLVLLMAVCFDVYNKNK 403 AFIMGVMNNGMSIMGIGIDYQQ+IKGLVLL AV FDVYNKNK Sbjct: 360 AFIMGVMNNGMSIMGIGIDYQQLIKGLVLLAAVFFDVYNKNK 401 >mll5656 [G] COG4214 ABC-type xylose transport system, permease component Mlo Mesorhizobium loti Length = 428 Score = 437 bits (1124), Expect = e-122, Method: Compositional matrix adjust. Identities = 232/404 (57%), Positives = 294/404 (72%), Gaps = 24/404 (5%) Query: 24 SFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPLNLTNLVLQNSYIVIMALGMLMVIVA 83 S L N+REYG++++L+ IM FFQ T GTL +P+NL+NLV QNS+I++MALGML+VIV+ Sbjct: 24 SALTTNLREYGLIIALIVIMLFFQFTTSGTLFKPVNLSNLVQQNSFIIVMALGMLLVIVS 83 Query: 84 GHIDLSVGSVVGLIGALAAVLMVDYGWGFVP----ASIVCLIAGALIGAAQGYWIAYFKI 139 G+IDLSVGSV G IGALAA +MV + G + SIVCLI G LIGAAQGYWIAY +I Sbjct: 84 GYIDLSVGSVAGFIGALAANMMVIWQLGPLSNPLVVSIVCLIVGGLIGAAQGYWIAYHRI 143 Query: 140 PSFIVTLAGMLVFKGMALALLQG-QSLGPFPQTFQMLSSGFIPEL---------TDNT-- 187 PSFIVTLAGML+F+G+ ALL G S+GP P F+ LSSGFIP++ T N Sbjct: 144 PSFIVTLAGMLIFRGICQALLGGGSSVGPLPDGFKALSSGFIPDVIGPLTLIPPTVNAAG 203 Query: 188 --------TFRTTSLIVGIIAAVVLILVKLHGRRKQTKHGMEDEPAMFFLLKNGVFAIAI 239 T T++++G+IA V + RRK+ +HG E EP F++K V + Sbjct: 204 KTIVGSGLTLHMTTIVLGLIAVVAYAYFGVRTRRKRERHGYEAEPFPLFVIKTLVASALA 263 Query: 240 IAFSYLLSTYRGMPNVLIIMFALMVLYTFITSRTTLGRRVYAVGGNEKAAKLSGIKTERV 299 + Y ++YRG+P VL++M L+ L+ F+T R T+GRR+YA+GGN KAA+LSGI TER+ Sbjct: 264 LFLVYEFASYRGLPVVLLVMGVLISLFVFVTKRMTIGRRIYAMGGNPKAAQLSGINTERL 323 Query: 300 SFFTFVNMGVLAALAGLIFAARLNTATPKAGLGFELDVIAACFIGGASASGGVGKVMGAV 359 + F+NMGVL+AL GLI AARL A P AGLG ELDVIAA FIGGASA GGVG+V+GAV Sbjct: 324 TLLVFINMGVLSALGGLIIAARLGQAVPAAGLGSELDVIAAVFIGGASAMGGVGQVIGAV 383 Query: 360 IGAFIMGVMNNGMSIMGIGIDYQQMIKGLVLLMAVCFDVYNKNK 403 +G FIMGVMNNGMSIMG+ +D+QQ++KGLVLL AV FDVYNKNK Sbjct: 384 VGGFIMGVMNNGMSIMGVNVDWQQVVKGLVLLGAVIFDVYNKNK 427 >BH3440 [G] COG4214 ABC-type xylose transport system, permease component Bha Bacillus halodurans Length = 388 Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust. Identities = 211/383 (55%), Positives = 302/383 (78%), Gaps = 4/383 (1%) Query: 24 SFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPLNLTNLVLQNSYIVIMALGMLMVIVA 83 LKNNMR YGM+++L+ I+ F +++DG L+RPLN+TNL+LQNSYI+++A+GM+MVI+A Sbjct: 5 ELLKNNMRSYGMIVALMFIILLFSVLSDGILLRPLNVTNLILQNSYILVLAIGMVMVIIA 64 Query: 84 GHIDLSVGSVVGLIGALAAVLMVDYGWGFVPASIVCLIAGALIGAAQGYWIAYFKIPSFI 143 GHIDLSVGSV +GA+AA+LM+D A ++CL+ GALIGA G++IAY K+PSFI Sbjct: 65 GHIDLSVGSVCAFVGAIAAILMIDMQLPTALAVLICLLLGALIGAWHGFFIAYLKMPSFI 124 Query: 144 VTLAGMLVFKGMALALLQGQSLGPFPQTFQMLSSGFIPELT--DNTTFRTTSLIVGIIAA 201 VTLAGML+F+G+ + +L GQS P+P F ++SSGF+P++ ++ T ++++G++ + Sbjct: 125 VTLAGMLLFRGLTMVVLGGQSKSPYPPEFILISSGFLPDIPFLGLASYHTLTMLIGVVLS 184 Query: 202 VVLILVKLHGRRKQTKHGMEDEPAMFFLLK-NGVFAIAIIAFSYLLSTYRGMPNVLIIMF 260 + +I +L RR Q + P FF+ K G+ AI I F+++L++YRG+PN+L+I+F Sbjct: 185 LFVIFSELKERRVQINNQFMVLPKGFFIAKLIGMVAIINI-FTFVLASYRGIPNILVILF 243 Query: 261 ALMVLYTFITSRTTLGRRVYAVGGNEKAAKLSGIKTERVSFFTFVNMGVLAALAGLIFAA 320 L+VL++F+ ++T +GR +YA GGN+KAA+LSG+KT+RV+F+ FVNMG L+A+AGLI+AA Sbjct: 244 VLIVLFSFVMNKTVIGRHIYATGGNQKAAELSGVKTKRVTFWVFVNMGFLSAMAGLIYAA 303 Query: 321 RLNTATPKAGLGFELDVIAACFIGGASASGGVGKVMGAVIGAFIMGVMNNGMSIMGIGID 380 RLN+ATP+AG FELD IAA FIGGAS +GGVG ++GAV+G +MGVMNNGMS++GI ID Sbjct: 304 RLNSATPRAGTMFELDAIAAAFIGGASMAGGVGTIVGAVVGGLVMGVMNNGMSLLGISID 363 Query: 381 YQQMIKGLVLLMAVCFDVYNKNK 403 +QQ IKGLVLL AV FD+YN+NK Sbjct: 364 WQQAIKGLVLLAAVGFDIYNRNK 386