BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0034.p (355 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO3906 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 287 3e-77 AGl3181 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 283 5e-76 SMb21589 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-typ... 261 1e-69 ZytfT [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type t... 242 8e-64 ECs5207 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 242 8e-64 >YPO3906 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ype Yersinia pestis Length = 339 Score = 287 bits (734), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 167/313 (53%), Positives = 219/313 (69%), Gaps = 13/313 (4%) Query: 32 ALALLLLIDFLLVPGFFKLEIKDGHLYGALIDIINRAAPLMLAALGMTLVIATRGVDISV 91 ALA++LLID L+ P FF + I+DG L+G++IDI+NR AP+ L ALGMTLVIAT G+D+SV Sbjct: 28 ALAVILLIDSLVAPHFFSIHIQDGRLFGSIIDILNRGAPVALLALGMTLVIATGGIDLSV 87 Query: 92 GAVVAISGAVAAVLIGGKMVVVNGVSEYVSNVPMVWALCAAMGAALLCGAWNGLLVAGLG 151 GAV+AI+GA AA L + P + L ++ LCG WNG LVA L Sbjct: 88 GAVMAIAGATAATLTS-------------AGYPFMTVLALSLAVGALCGLWNGFLVAVLQ 134 Query: 152 LQPIIATLILMVAGRGLAQLLTDGQIVTVYYKPFFFLGGGYLFGLPFSLYIAGAMFLLLA 211 +QPI+ATL+LMVAGRG+AQL+T+GQIVT LG L LP S+ IA +M +L+ Sbjct: 135 IQPIVATLMLMVAGRGIAQLITEGQIVTFDSGGLATLGSSTLMYLPMSVVIACSMLILVW 194 Query: 212 LLMKKTALGLFIQSVGINPVASRLAGIRTAALIFFVYMFCSACAGLAGLMIASNIKSADA 271 LL +KTALGLFI+SVGIN ++R AG+ T ++ VY+ C CA +AG+++ ++I+ ADA Sbjct: 195 LLTRKTALGLFIESVGINLRSARNAGVSTRLVLIAVYVICGVCAAVAGIIVTADIRGADA 254 Query: 272 NNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQTLTYTIYSLGVPPEVNMVVK 331 NNAGL LELDAILAV +GG SL GG+F+L+ SVIGALIIQ + I G PE N+V+K Sbjct: 255 NNAGLWLELDAILAVVIGGASLMGGRFNLLLSVIGALIIQGMNTGILLSGYQPEFNLVLK 314 Query: 332 SIVVFLVCLSQSP 344 +IVV V + QSP Sbjct: 315 AIVVLAVLVVQSP 327 >AGl3181 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 348 Score = 283 bits (724), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 163/326 (50%), Positives = 225/326 (69%), Gaps = 13/326 (3%) Query: 30 LAALALLLLIDFLLVPGFFKLEIKDGHLYGALIDIINRAAPLMLAALGMTLVIATRGVDI 89 LAAL ++L ++ PGF + +++G LYG+LIDI+ RAAP+ L +GMTLVIAT+G+D+ Sbjct: 16 LAALFIILAAITIISPGFLDVSLQNGRLYGSLIDILVRAAPVALLTIGMTLVIATKGIDL 75 Query: 90 SVGAVVAISGAVAAVLIGGKMVVVNGVSEYVSNVPMVWALCAAMGAALLCGAWNGLLVAG 149 S+GAV+AI GAVAA LI NG S +P V A+ A+G A CG WNG+LVA Sbjct: 76 SIGAVIAICGAVAATLIS------NGHS-----IPAVLAVSLAVGIA--CGLWNGVLVAL 122 Query: 150 LGLQPIIATLILMVAGRGLAQLLTDGQIVTVYYKPFFFLGGGYLFGLPFSLYIAGAMFLL 209 L +QPIIATLILMVAGRG+AQL+T+G I+T F +G G G+P + I A L+ Sbjct: 123 LDIQPIIATLILMVAGRGIAQLITEGVILTFNDDGFAAIGSGSFAGVPLPVIIWVAAALV 182 Query: 210 LALLMKKTALGLFIQSVGINPVASRLAGIRTAALIFFVYMFCSACAGLAGLMIASNIKSA 269 + +L++K+ALG I++ GIN A+ LAG+R L+FFVY CA +AG+++ ++I+ A Sbjct: 183 IGVLVRKSALGFLIEATGINRRAAALAGVRARFLLFFVYAVSGLCAAIAGMIVTADIRGA 242 Query: 270 DANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQTLTYTIYSLGVPPEVNMV 329 DANNAGL LELDAILAV +GGTSL GG+FS+ S+IGALIIQT+ I G PPE N++ Sbjct: 243 DANNAGLWLELDAILAVVIGGTSLNGGRFSITASLIGALIIQTINTGILVSGFPPEFNLI 302 Query: 330 VKSIVVFLVCLSQSPEFRRMLRMSKS 355 +K+ ++ +V QSP +L ++ Sbjct: 303 IKAGIIMVVLTLQSPAIMAVLGFVRT 328 >SMb21589 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Sme Sinorhizobium meliloti Length = 341 Score = 261 bits (668), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 157/322 (48%), Positives = 222/322 (68%), Gaps = 13/322 (4%) Query: 26 LVRPLAALALLLLIDFLLVPGFFKLEIKDGHLYGALIDIINRAAPLMLAALGMTLVIATR 85 L+ L ALA +++ ++ PGF L+I++G LYG+++DI+NR AP++L A+GMT+VIAT+ Sbjct: 12 LLPQLIALAAIVVAISIVFPGFLNLQIQNGRLYGSMVDILNRGAPVVLLAIGMTVVIATK 71 Query: 86 GVDISVGAVVAISGAVAAVLIGGKMVVVNGVSEYVSNVPMVWALCAAMGAALLCGAWNGL 145 G+D+SVGAV+AI GAVAA LI S + L A + ++CG WNG+ Sbjct: 72 GIDLSVGAVMAICGAVAASLI-------------TSGHSLAETLLATLAVGIVCGIWNGV 118 Query: 146 LVAGLGLQPIIATLILMVAGRGLAQLLTDGQIVTVYYKPFFFLGGGYLFGLPFSLYIAGA 205 LVA L +QPIIATL+LMVAGRG+AQL+T+G I+T F+G G GLP L I Sbjct: 119 LVAVLDIQPIIATLVLMVAGRGIAQLITEGTILTFNDPGLIFIGSGSFAGLPMPLVIWLV 178 Query: 206 MFLLLALLMKKTALGLFIQSVGINPVASRLAGIRTAALIFFVYMFCSACAGLAGLMIASN 265 LL+ALL+++TALG+ I+++GIN AS L+G+ T L+ Y+ CA +AG++ A++ Sbjct: 179 FGLLVALLVRRTALGMLIEAIGINRQASTLSGVLTPVLLVAAYVLSGLCAAIAGIIAAAD 238 Query: 266 IKSADANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQTLTYTIYSLGVPPE 325 I+ ADANNAGL LELDAILAV +GGTSL GG+FS+ SV+GA+IIQ + I G PPE Sbjct: 239 IRGADANNAGLWLELDAILAVVVGGTSLLGGRFSIAASVLGAVIIQAINTGILLSGFPPE 298 Query: 326 VNMVVKSIVVFLVCLSQSPEFR 347 N+++K+ ++ + + QSP FR Sbjct: 299 FNLIIKAAIIIFILVLQSPRFR 320 >ZytfT [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components EcZ Escherichia coli O157:H7 EDL933 Length = 341 Score = 242 bits (618), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 155/311 (49%), Positives = 215/311 (69%), Gaps = 13/311 (4%) Query: 45 PGFFKLEIKDGHLYGALIDIINRAAPLMLAALGMTLVIATRGVDISVGAVVAISGAVAAV 104 P F+++ ++DG L+G+ IDI+NRAAP+ L A+GMTLVIAT G+D+SVGAV+AI+GA A Sbjct: 40 PHFWQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAA 99 Query: 105 LIGGKMVVVNGVSEYVSNVPMVWALCAAMGAALLCGAWNGLLVAGLGLQPIIATLILMVA 164 + V G S +P+V L +A+G +L G WNG+LVA L +QP +ATLILMVA Sbjct: 100 M------TVAGFS-----LPIV--LLSALGTGILAGLWNGILVAILKIQPFVATLILMVA 146 Query: 165 GRGLAQLLTDGQIVTVYYKPFFFLGGGYLFGLPFSLYIAGAMFLLLALLMKKTALGLFIQ 224 GRG+AQL+T GQI+T + G G L LP + IA +L LL +KTALG+FI+ Sbjct: 147 GRGVAQLITSGQIITFNSPDLSWFGSGSLLFLPTPVIIAVLTLILFWLLTRKTALGMFIE 206 Query: 225 SVGINPVASRLAGIRTAALIFFVYMFCSACAGLAGLMIASNIKSADANNAGLLLELDAIL 284 +VGIN A++ AG+ T ++ Y+ CA +AG+++A++I+ ADANNAGL LELDAIL Sbjct: 207 AVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAIL 266 Query: 285 AVTLGGTSLAGGKFSLVGSVIGALIIQTLTYTIYSLGVPPEVNMVVKSIVVFLVCLSQSP 344 AV +GG SL GG+F+L+ SV+GALIIQ + I G PPE+N VVK++VV V + QS Sbjct: 267 AVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQ 326 Query: 345 EFRRMLRMSKS 355 F +++ +S Sbjct: 327 RFISLIKGVRS 337 >ECs5207 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ecs Escherichia coli O157:H7 Length = 341 Score = 242 bits (618), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 155/311 (49%), Positives = 215/311 (69%), Gaps = 13/311 (4%) Query: 45 PGFFKLEIKDGHLYGALIDIINRAAPLMLAALGMTLVIATRGVDISVGAVVAISGAVAAV 104 P F+++ ++DG L+G+ IDI+NRAAP+ L A+GMTLVIAT G+D+SVGAV+AI+GA A Sbjct: 40 PHFWQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAA 99 Query: 105 LIGGKMVVVNGVSEYVSNVPMVWALCAAMGAALLCGAWNGLLVAGLGLQPIIATLILMVA 164 + V G S +P+V L +A+G +L G WNG+LVA L +QP +ATLILMVA Sbjct: 100 M------TVAGFS-----LPIV--LLSALGTGILAGLWNGILVAILKIQPFVATLILMVA 146 Query: 165 GRGLAQLLTDGQIVTVYYKPFFFLGGGYLFGLPFSLYIAGAMFLLLALLMKKTALGLFIQ 224 GRG+AQL+T GQI+T + G G L LP + IA +L LL +KTALG+FI+ Sbjct: 147 GRGVAQLITSGQIITFNSPDLSWFGSGSLLFLPTPVIIAVLTLILFWLLTRKTALGMFIE 206 Query: 225 SVGINPVASRLAGIRTAALIFFVYMFCSACAGLAGLMIASNIKSADANNAGLLLELDAIL 284 +VGIN A++ AG+ T ++ Y+ CA +AG+++A++I+ ADANNAGL LELDAIL Sbjct: 207 AVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAIL 266 Query: 285 AVTLGGTSLAGGKFSLVGSVIGALIIQTLTYTIYSLGVPPEVNMVVKSIVVFLVCLSQSP 344 AV +GG SL GG+F+L+ SV+GALIIQ + I G PPE+N VVK++VV V + QS Sbjct: 267 AVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQ 326 Query: 345 EFRRMLRMSKS 355 F +++ +S Sbjct: 327 RFISLIKGVRS 337