BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0017.p (344 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb21300 [F] COG0274 Deoxyribose-phosphate aldolase Sme Sinorhiz... 512 e-145 AGl76 [F] COG0274 Deoxyribose-phosphate aldolase Atu Agrobacteri... 410 e-114 mll4784 [F] COG0274 Deoxyribose-phosphate aldolase Mlo Mesorhizo... 385 e-107 VC2350 [F] COG0274 Deoxyribose-phosphate aldolase Vch Vibrio cho... 155 1e-37 YPO0436 [F] COG0274 Deoxyribose-phosphate aldolase Ype Yersinia ... 147 3e-35 >SMb21300 [F] COG0274 Deoxyribose-phosphate aldolase Sme Sinorhizobium meliloti Length = 334 Score = 512 bits (1319), Expect = e-145, Method: Compositional matrix adjust. Identities = 251/321 (78%), Positives = 278/321 (86%), Gaps = 2/321 (0%) Query: 26 APAGH--PRNGVQPYDAAAFEHLRINLSAAEKRVATLKGRRSVKKDAQAAWLLKAITCID 83 A AGH PRN D + R+NLSAAE+RV TL GRR+VKKDAQAAWLLKA+TCID Sbjct: 14 AGAGHNWPRNDGVELDLSWVLDQRVNLSAAERRVQTLPGRRTVKKDAQAAWLLKAVTCID 73 Query: 84 LTTLSGDDTPQRVRRLCAKAANPVRADLLEALGMQARGLTTGAVCVYHRFVKTAVEALEG 143 LTTL+GDDT +RV+RLCAKA PVR D+L+ALGM RG+TTGA+CVYHRFV TAVEALEG Sbjct: 74 LTTLNGDDTAERVKRLCAKARQPVRQDILDALGMGDRGITTGAICVYHRFVSTAVEALEG 133 Query: 144 KNIPVAAVSTGFPAGLNPHALKLKEIEASVRDGAAEIDIVITREHVLTGNWEALYREMRD 203 IPVAAVSTGFPAGL PH +KL+EI+ASV DGA EIDIVITREHVLTGNW+ALY EMRD Sbjct: 134 SGIPVAAVSTGFPAGLVPHDVKLREIKASVADGAREIDIVITREHVLTGNWQALYDEMRD 193 Query: 204 FRQACGDAHVKAILATGELKTLRNVAKASMVCMMAGADFIKTSTGKESVNATPLVSLVML 263 FR ACGDAHVKAILATG+LKTLRNVA+AS+VCMMAGADFIKTSTGKE VNAT LV+L ML Sbjct: 194 FRAACGDAHVKAILATGDLKTLRNVARASLVCMMAGADFIKTSTGKEGVNATLLVTLAML 253 Query: 264 RMIRQYQEMTGIQVGYKPAGGVATAKDVLEYQVLMKEELGDDWLQPDLFRVGASSLLADI 323 RMIR Y+E TGI+VGYKPAGG++ AKDVL YQ LMKEELG +WL+PDLFRVGASSLLADI Sbjct: 254 RMIRAYEERTGIKVGYKPAGGISVAKDVLNYQFLMKEELGREWLEPDLFRVGASSLLADI 313 Query: 324 ERQLEHHVTGRYSAFNRHAIG 344 ERQLEHHV+G YSA NRH IG Sbjct: 314 ERQLEHHVSGAYSALNRHPIG 334 >AGl76 [F] COG0274 Deoxyribose-phosphate aldolase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 345 Score = 410 bits (1053), Expect = e-114, Method: Compositional matrix adjust. Identities = 202/312 (64%), Positives = 238/312 (76%) Query: 31 PRNGVQPYDAAAFEHLRINLSAAEKRVATLKGRRSVKKDAQAAWLLKAITCIDLTTLSGD 90 PRN F+ + +N SA+E+R AT+ RRSVKK+ Q AW +KAITCIDLTTLSGD Sbjct: 32 PRNNGTALKPEWFDDVSVNRSASERRAATITTRRSVKKEYQVAWQIKAITCIDLTTLSGD 91 Query: 91 DTPQRVRRLCAKAANPVRADLLEALGMQARGLTTGAVCVYHRFVKTAVEALEGKNIPVAA 150 DTP RVRRLCAKA PVR D+LE LG+ G+TTGAVCVY V AV+ALEG IPVA+ Sbjct: 92 DTPGRVRRLCAKARRPVREDILETLGLADAGITTGAVCVYPTMVPHAVKALEGTAIPVAS 151 Query: 151 VSTGFPAGLNPHALKLKEIEASVRDGAAEIDIVITREHVLTGNWEALYREMRDFRQACGD 210 V+TGFP+GL P +L EI +V GA EIDIVITRE VLT NW ALY E+ R+ACGD Sbjct: 152 VATGFPSGLTPLPQRLAEIRYAVEQGAKEIDIVITREFVLTQNWTALYDEISAMREACGD 211 Query: 211 AHVKAILATGELKTLRNVAKASMVCMMAGADFIKTSTGKESVNATPLVSLVMLRMIRQYQ 270 AH+KAILATG+L TL NV +ASMV M AG+DFIKTSTGKE VNAT VSL M+R +R Y Sbjct: 212 AHMKAILATGDLNTLTNVYRASMVAMQAGSDFIKTSTGKEEVNATLPVSLTMVRALRDYG 271 Query: 271 EMTGIQVGYKPAGGVATAKDVLEYQVLMKEELGDDWLQPDLFRVGASSLLADIERQLEHH 330 E+TG VG+KPAGG+ TAKD + + LMKEELG+ WL+PDLFR+GASS+L DIERQLEH Sbjct: 272 ELTGQMVGFKPAGGLKTAKDAVSWLTLMKEELGNRWLEPDLFRIGASSMLGDIERQLEHF 331 Query: 331 VTGRYSAFNRHA 342 VTGRYS+ + HA Sbjct: 332 VTGRYSSAHHHA 343 >mll4784 [F] COG0274 Deoxyribose-phosphate aldolase Mlo Mesorhizobium loti Length = 348 Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust. Identities = 195/313 (62%), Positives = 231/313 (73%), Gaps = 1/313 (0%) Query: 32 RNGVQPYDAAAFEHLR-INLSAAEKRVATLKGRRSVKKDAQAAWLLKAITCIDLTTLSGD 90 RN D E +R +N SA E+RVA+L RRS+K D QAAWLL+A+ C+DLTTL+ + Sbjct: 35 RNPGMKLDLGFMESVRSVNRSALERRVASLTKRRSIKADNQAAWLLRAVACMDLTTLNSN 94 Query: 91 DTPQRVRRLCAKAANPVRADLLEALGMQARGLTTGAVCVYHRFVKTAVEALEGKNIPVAA 150 DT +RVRRLCAKA NP R D++E LG+ + AVCVYH FV TAV+A+ G I VAA Sbjct: 95 DTEERVRRLCAKAINPFRRDIVEGLGIAGETIRPAAVCVYHPFVATAVDAVRGTGIHVAA 154 Query: 151 VSTGFPAGLNPHALKLKEIEASVRDGAAEIDIVITREHVLTGNWEALYREMRDFRQACGD 210 VST FP GL P + +L+EIEASVRDGA EID+VI R V W LY E+ R ACGD Sbjct: 155 VSTAFPHGLAPLSTRLQEIEASVRDGADEIDVVIPRGLVFGAKWRELYNEIVSMRAACGD 214 Query: 211 AHVKAILATGELKTLRNVAKASMVCMMAGADFIKTSTGKESVNATPLVSLVMLRMIRQYQ 270 AH+K IL TG+L TLRNV ASMV MMAGADFIKTSTGKESVNAT V L M+R IR Y Sbjct: 215 AHLKVILGTGDLATLRNVMLASMVAMMAGADFIKTSTGKESVNATLPVGLAMVRAIRAYF 274 Query: 271 EMTGIQVGYKPAGGVATAKDVLEYQVLMKEELGDDWLQPDLFRVGASSLLADIERQLEHH 330 E TG +G+KPAGG++TAK L++ VLMKEELG WL+P+LFR GASSLL DIERQLEHH Sbjct: 275 EETGYLIGFKPAGGISTAKASLDWLVLMKEELGRPWLEPELFRFGASSLLTDIERQLEHH 334 Query: 331 VTGRYSAFNRHAI 343 +TG YSA +RHA+ Sbjct: 335 LTGHYSANHRHAM 347 >VC2350 [F] COG0274 Deoxyribose-phosphate aldolase Vch Vibrio cholerae Length = 259 Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/244 (38%), Positives = 135/244 (55%), Gaps = 19/244 (7%) Query: 76 LKAITCIDLTTLSGDDTPQRVRRLCAKAANPVRADLLEALGMQARGLTTGAVCVYHRFVK 135 L+A+ +DLTTL+ +DT +V +LC A +PV T A+C+Y RF+ Sbjct: 9 LRALKLMDLTTLNDNDTDAKVIQLCHDAKSPVG--------------NTAAICIYPRFIP 54 Query: 136 TAVEALEGKNIPVA--AVSTGFPAGLNPHALKLKEIEASVRDGAAEIDIVITREHVLTGN 193 A + L + P A T FP G + + + E +A+V GA E+D+V ++ GN Sbjct: 55 IAKKTLREQGTPEIRIATVTNFPHGNDDIEIAVAETKAAVAYGADEVDVVFPYRALIAGN 114 Query: 194 WEALYREMRDFRQACGD-AHVKAILATGELKTLRNVAKASMVCMMAGADFIKTSTGKESV 252 + + ++ + ACGD +K I+ TGELK + KAS +C+ AGADFIKTSTGK V Sbjct: 115 EQVGFDLVKQCKAACGDKVLLKVIIETGELKQEALIKKASQICIEAGADFIKTSTGKVPV 174 Query: 253 NATPLVSLVMLRMIRQYQEMTGIQVGYKPAGGVATAKDVLEYQVLMKEELGDDWLQPDLF 312 NATP + +ML +IR VG+KPAGGV TA+D +Y + E LG DW + Sbjct: 175 NATPEYARMMLEVIRDMG--VAKTVGFKPAGGVRTAEDAQQYLAMADEILGGDWADSRHY 232 Query: 313 RVGA 316 R GA Sbjct: 233 RFGA 236 >YPO0436 [F] COG0274 Deoxyribose-phosphate aldolase Ype Yersinia pestis Length = 265 Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 136/243 (55%), Gaps = 20/243 (8%) Query: 77 KAITCIDLTTLSGDDTPQRVRRLCAKAANPVRADLLEALGMQARGLTTGAVCVYHRFVKT 136 +A++ +DLTTL+ DDT ++V LC +A +P T A+C+Y RF+ Sbjct: 16 RALSLMDLTTLNDDDTDEKVIALCHQAKSPAG--------------NTAAICIYPRFIPV 61 Query: 137 AVEALEGKNIPVA--AVSTGFPAGLNPHALKLKEIEASVRDGAAEIDIVITREHVLTGNW 194 A +AL + P A T FP G + A+ L E A++ GA E+D+V ++ GN Sbjct: 62 ARKALREQGTPEIRIATVTNFPHGNDDVAIALAETRAAIAYGADEVDVVFPYRALMAGND 121 Query: 195 EALYREMRDFRQACGDAHV--KAILATGELKTLRNVAKASMVCMMAGADFIKTSTGKESV 252 + + ++ ++AC A+V K I+ TGELK + +AS + + AGADFIKTSTGK V Sbjct: 122 KIGFELVKTCKEACAAANVLLKVIIETGELKQAHLIRQASEIAIKAGADFIKTSTGKVPV 181 Query: 253 NATPLVSLVMLRMIRQYQEMTGIQVGYKPAGGVATAKDVLEYQVLMKEELGDDWLQPDLF 312 NAT + +M+R IR+ G VG+KPAGGV TA+D ++ L + +G+ W F Sbjct: 182 NATLESADIMIRTIRELG--VGETVGFKPAGGVRTAEDAAQFLQLADQLMGEGWADARHF 239 Query: 313 RVG 315 R G Sbjct: 240 RFG 242