BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0007.p         (177 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc840 [S] COG5343 Uncharacterized protein conserved in bacteria...    82   4e-16

>AGc840 [S] COG5343 Uncharacterized protein conserved in bacteria Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 237

 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 2/170 (1%)

Query: 4   SASLWQRIERSLPMPAPVRQRGGWHAWWESLQF-WRWSTGAALACSVLLAVLMLRAEPPA 62
           ++ LW  IE  LP  A            ++ +  WR    +A+A +++LA  +  +    
Sbjct: 65  NSELWSNIESRLPPQAKFTANKSTRTANDNRKNGWRSIAVSAIAATLVLAAGLTFSLTRT 124

Query: 63  RAPAYMVVLVAPQDKAPGWVVQTGGSGRLNLIPLGVATVPQEKALQFWTKGANWNGPVSL 122
             P  + VLV    +    VV+  G+ +  +  L    VPQ+K +Q WT  +   GPVSL
Sbjct: 125 TEPLVIAVLVNEAGEVQA-VVEDFGNEKATVRMLADFAVPQDKTIQVWTLPSREVGPVSL 183

Query: 123 GIVKPGRTQEVPLDKLPPLQPDQLFEITLEPGNGSPTGRPTGPILYIGRA 172
           G+++  R+  +    LP  + DQL+EITLE   GSPTGRPTGPIL  G A
Sbjct: 184 GLIEGVRSASLEGPTLPKPRNDQLYEITLEQAGGSPTGRPTGPILAKGLA 233