BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0132.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311906|ref|YP_003775998.1| L-lactate dehydrogenase [Herbas...   165   2e-42
gi|300309586|ref|YP_003773678.1| FMN-dependent L-lactate dehydro...   127   4e-31

>gi|300311906|ref|YP_003775998.1| L-lactate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score =  165 bits (418), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 116/182 (63%), Gaps = 3/182 (1%)

Query: 4   LGRPHDLGNVSAYLNKKTG---LEDYVGWLGANFDPGIGWHDLQWIRDSWQGSMLLKGIL 60
           LG     GN++ ++    G   ++    W  + FDP + W D+ WI+  W G ++LKGIL
Sbjct: 198 LGGRKTFGNLAGHIKGGEGAGGVQTLSKWTASQFDPTLNWDDVAWIKQQWGGKLILKGIL 257

Query: 61  DPEDAREAVRFGADGIVVSNHGGRQLDGVLSTARALPEIASAVKGDLALLVDSGVRSGLD 120
           D EDA+ AV+ GAD IVVSNHGGRQLDG +S+  ALP IA AV   + +  D G+RSG D
Sbjct: 258 DVEDAKLAVQSGADAIVVSNHGGRQLDGAMSSIEALPAIAQAVGDQIEVWFDGGIRSGQD 317

Query: 121 VVRLLALGADTVMLGRAFIYALAAEGQAGVENVLSLFAKEMQVAMTLTGARRIADIRPDS 180
           V++ +ALGA   M+GRAF+Y+L A G  GV  +L +  KE+ V+M LTG + I D+ P  
Sbjct: 318 VLKAVALGARGTMIGRAFLYSLGAMGGEGVSQMLEIMRKELDVSMALTGTKDIKDVGPQI 377

Query: 181 LV 182
           L+
Sbjct: 378 LI 379


>gi|300309586|ref|YP_003773678.1| FMN-dependent L-lactate
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score =  127 bits (320), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 70/138 (50%), Positives = 92/138 (66%)

Query: 30  LGANFDPGIGWHDLQWIRDSWQGSMLLKGILDPEDAREAVRFGADGIVVSNHGGRQLDGV 89
           LG +    + W D+QW+R  W G ++LKG++  EDA+ AV  G DGIV+SNHGGRQLDG 
Sbjct: 257 LGQSLSAALDWADVQWLRGIWPGKLVLKGVMQVEDAQRAVALGVDGIVLSNHGGRQLDGA 316

Query: 90  LSTARALPEIASAVKGDLALLVDSGVRSGLDVVRLLALGADTVMLGRAFIYALAAEGQAG 149
           LST   LPE+ +AVKG L +++D G R G D+V+ +ALGAD V+LGRA  Y LAA GQAG
Sbjct: 317 LSTMDVLPEVVAAVKGQLTVMLDGGFRRGADIVKAIALGADAVLLGRATTYGLAAGGQAG 376

Query: 150 VENVLSLFAKEMQVAMTL 167
               L +   E+   + L
Sbjct: 377 ATRALEILRSEVDRVLAL 394


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 653,238
Number of extensions: 28967
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)