BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0130.p
         (293 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310332|ref|YP_003774424.1| SEL1 subfamily TPR repeatcontai...   373   e-105
gi|300313663|ref|YP_003777755.1| TPR repeat containing, SEL1 sub...    70   2e-13

>gi|300310332|ref|YP_003774424.1| SEL1 subfamily TPR
           repeatcontaining protein [Herbaspirillum seropedicae
           SmR1]
          Length = 328

 Score =  373 bits (958), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/286 (67%), Positives = 236/286 (82%)

Query: 1   LAGADQALAAKDYASAHALYSRAAADNPLAQFTLGLFEREGWGRPSDPVAACRWFEQAAQ 60
           L  A++ALAAKDY+ A+AL++R AA+NPLAQF+LGLFEREGWGR S+PVAAC WFE+AA 
Sbjct: 38  LTTANKALAAKDYSRAYALFARHAANNPLAQFSLGLFEREGWGRTSNPVAACNWFEKAAH 97

Query: 61  ANIPAAQQFLGDCYAGGIGRAADGAAAVRWYVKAAESGIAYAWCSAGELYIDGRLLPRNL 120
           +NIPAAQQFLGDC A GIGR  DG AA  WY KAA SGIAYA CSAGELYI+G+ L +++
Sbjct: 98  SNIPAAQQFLGDCLAKGIGREVDGKAAESWYRKAAASGIAYALCSAGELYIEGKTLEKDV 157

Query: 121 GQGLALCVRAAQADSSPAMLRLGDYFREGRQLPQDLERARYWCQQAAERHNLAAQFHLGL 180
            +GLALC+ AAQADS+PAMLRL DY+R+G+ +PQ+L  ARYW +QAA+RH   AQ+ LG+
Sbjct: 158 DRGLALCLAAAQADSAPAMLRLADYYRDGKDVPQNLVAARYWYEQAAQRHQHEAQYRLGI 217

Query: 181 MLSQGEGGPADLRLALSWLERAASEGYAPAYLPVAVLYANAAPDPATGALSADQLARIYM 240
           M+S+G GG  D+  AL WLE AA EGY PAYLPVA+LYANA+PDP TG LS + LA++YM
Sbjct: 218 MMSEGHGGDVDIPSALFWLEHAAMEGYRPAYLPVAILYANASPDPKTGMLSPENLAKVYM 277

Query: 241 WNSAAKATSKDADQQALIERIAQLVLAVMPPAWRPELDRRVAEHLA 286
           WNSAAKA + +A Q A IERI ++VLAVMPP W+P+LDR+VAEHLA
Sbjct: 278 WNSAAKARTTNAVQLAEIERIEKMVLAVMPPQWQPDLDRKVAEHLA 323


>gi|300313663|ref|YP_003777755.1| TPR repeat containing, SEL1
           subfamily protein [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 87/185 (47%), Gaps = 8/185 (4%)

Query: 20  YSRAAADN--PLAQFTLGLFEREGWGRPSDPVAACRWFEQAAQANIPAAQQFLGDCYAGG 77
           + RAAA    P AQ  LG     G G  +D   A  W E AAQA+   A   +G C   G
Sbjct: 35  WLRAAASQSVPRAQAILGQRLLFGEGCAADAGEAVHWLELAAQADDLHAINLMGRCCEHG 94

Query: 78  IGRAADGAAAVRWYVKAAESGIAYAWCSAGELYIDGRLLPRNLGQGLALCVRAAQADSSP 137
            GR  D   AV WY  AA  G+ +   +   L + G  +  +    L+   RAA    + 
Sbjct: 95  WGRQRDTTMAVYWYRLAASRGLDWGMYNLANLMMSGAGVDVDRATALSWYRRAADMGHAK 154

Query: 138 AMLRLGDYFREGRQLPQDLERARYWCQQAAERHNLAAQFHLG-LMLSQGEGGPADLRLAL 196
           ++  LG +F EG ++  DLERA    +QAA   +   QF+   L+L++G+       LAL
Sbjct: 155 SINVLGRFFEEGWEVATDLERAFALYRQAALGGDFRGQFNYSRLLLARGQRA-----LAL 209

Query: 197 SWLER 201
            WL R
Sbjct: 210 EWLRR 214


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 869,342
Number of extensions: 34723
Number of successful extensions: 183
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 2
Length of query: 293
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 209
Effective length of database: 1,222,130
Effective search space: 255425170
Effective search space used: 255425170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)