BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0129.p
         (583 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310333|ref|YP_003774425.1| filamentous hemagglutinin outer...   638   0.0  
gi|300309649|ref|YP_003773741.1| hemagglutinin-like protein [Her...   110   4e-25

>gi|300310333|ref|YP_003774425.1| filamentous hemagglutinin outer
           membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 1568

 Score =  638 bits (1645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/554 (63%), Positives = 429/554 (77%), Gaps = 30/554 (5%)

Query: 1   MR-HASMNRIYRLVWSHVQQAWVIVSERTRGQGKKVSRRLAAAAALSAASALAMAGPSGG 59
           MR HAS+NRIYRLVWSHV QAWV+VSE +RGQGK+ +R++ AAA L  +  LA A P GG
Sbjct: 1   MRGHASLNRIYRLVWSHVHQAWVVVSEVSRGQGKRANRKVIAAALL-VSPLLAQAAPVGG 59

Query: 60  AVTAGSGSISQSGNTTTVTQGSQNLSVNWQSFNTSSGEKVNFVQPSASAIAVNRIQDVNA 119
            VTAG+GSISQSGNTTT+TQ SQNLSVNWQSFNT+S E VNF+QPSASAIAVNRI D N 
Sbjct: 60  QVTAGAGSISQSGNTTTITQSSQNLSVNWQSFNTASHETVNFIQPSASAIAVNRIYDTNP 119

Query: 120 TQFMGQLNANGQVYLINPNGILFGAGAQVNVGSLVASTLDINDAALGSSTRNFSGMGSGS 179
           T+F GQLNANGQVYLINPNG+LFGAG+QVNVG LVASTLD++DA+L ++ RNFSG G+GS
Sbjct: 120 TRFFGQLNANGQVYLINPNGVLFGAGSQVNVGGLVASTLDMSDASLAAAARNFSGSGTGS 179

Query: 180 IVNQGSINSANGGYVAFLGKQVSNQGSIATTAGTTALAAGSDVTLSFAGNNLVSLRVNQS 239
           I+NQG I+ ANGGYVAF+G  VSNQG+I   AGT ALAAG+DVTL+FA  +LV L+VNQ+
Sbjct: 180 IINQGDISVANGGYVAFIGNTVSNQGNITAPAGTVALAAGNDVTLTFANASLVKLQVNQN 239

Query: 240 TLDSLSGNGGLIQADGGTVLLSAGARDAVLASAVNNTGIIQARSVQNVNGTIVLEAGSHG 299
           TL++LS NGGLI ADGG VL+SAGA+DAVLAS VNNTGII+ARSVQNVNG IVL+ G+  
Sbjct: 240 TLNNLSENGGLILADGGAVLMSAGAKDAVLASVVNNTGIIEARSVQNVNGRIVLDGGNLA 299

Query: 300 TATNSGTLDASGRSAGETGGTVKLLGGTVAQTSGGRIDVTGDAGGGTAYVGGNFLGAGPE 359
           T +NSGTLDASG++AG+TGGTVK+LG  V   SG  ID++GDAGGG+A+VGGNFLGAGPE
Sbjct: 300 TVSNSGTLDASGKNAGQTGGTVKVLGKEVTLASGSNIDISGDAGGGSAFVGGNFLGAGPE 359

Query: 360 QNATSTTVAXQATGSSIDASAISNGNGGRVALWSDGTTRFDGSIAARGGAWSGNGGAVET 419
           QNA +TTVA    G++I+A A+SNGNGG VA+WSDG T F+GSI ARGG   GNGG VET
Sbjct: 360 QNALNTTVAA---GATINADALSNGNGGNVAIWSDGNTSFNGSITARGGKDGGNGGQVET 416

Query: 420 SGLKLKIGSTASVNTLAPRGSAGNWLLDPSDIKIGSIAFW--GSNYGIDVDSAVLTAALN 477
           SG  L +G  A VNTLAP+G  G+WLLDP D++I    ++    N   D+  A +TAAL 
Sbjct: 417 SGEHLTVGKPAFVNTLAPKGKVGSWLLDPQDMRI----YYDQDPNSHGDISGAQITAALQ 472

Query: 478 NGNVTIKTSRAGPSCGVT----CGSGSGSSGDILVLDPIGVAVASYDANHTATYVNWDSN 533
             +VTIKT   GP+   T    CG+G+  +GDI ++D  GV +           +NW + 
Sbjct: 473 YSDVTIKT---GPTVSCTNVSGCGAGTSGNGDINLVD--GVLIGG---------MNWTTG 518

Query: 534 SYTLTLSAYNNVRF 547
           + TLTLSAY ++  
Sbjct: 519 T-TLTLSAYRDINL 531


>gi|300309649|ref|YP_003773741.1| hemagglutinin-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1422

 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 133/261 (50%), Gaps = 11/261 (4%)

Query: 56  PSGGAVTAGSGSISQSGNTTTVTQGSQNLSVNWQSFNTSSGEKVNFVQPSASAIAVNRIQ 115
           P+G +V  G+ +  Q+GN   + Q S      + SF+  +   VN  QPSA+A  + ++ 
Sbjct: 90  PTGWSVVNGNVTFIQNGNILNINQLSPQAIAQFLSFSIGADATVNVNQPSAAAALLAKVS 149

Query: 116 DVNATQFMGQLNANGQVYLINPNGILFGAGAQVNVGSLVASTLDINDAALGSSTRNFSGM 175
             + +Q  G+L+A G V L NPNG++ G    ++ G  +A++L I+D+   +   NF+  
Sbjct: 150 GGDISQIYGKLSATGTVVLYNPNGVVIGPSGSIDAGRFIATSLAISDSDFLAGKLNFARQ 209

Query: 176 GSGSIV-NQGSINSANGGYVAFLGKQVSNQGSIATTAGTTALAAGSDVTLSFAGNNLVSL 234
           G+  IV NQG I SA GG V  +G  VSN G I +  G   LAAG  VTL+      V++
Sbjct: 210 GNAGIVDNQGKIQSATGGSVYLIGSSVSNSGIIKSAQGEVILAAGETVTLADTATPGVTV 269

Query: 235 RVNQSTLDSLSGNGGLIQADGGTVLLSAGARDAVLASAVNNTGIIQARSVQNVNGTIVLE 294
            V  S  +    N G I A+ G        R  V A  +NN+G+I A SV    G I L 
Sbjct: 270 NVTGSAGNVT--NLGSITAEAG--------RIGVAAGLINNSGVINASSVVREGGRIFLR 319

Query: 295 AGSHGTATNSGTLDASGRSAG 315
           A  + T + S ++ A G   G
Sbjct: 320 ASQNLTTSASSSIHADGSRGG 340


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.126    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,594,993
Number of extensions: 62632
Number of successful extensions: 320
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 6
Length of query: 583
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 493
Effective length of database: 1,193,720
Effective search space: 588503960
Effective search space used: 588503960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 133 (55.8 bits)