BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0128.p
         (983 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310333|ref|YP_003774425.1| filamentous hemagglutinin outer...   797   0.0  

>gi|300310333|ref|YP_003774425.1| filamentous hemagglutinin outer
            membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 1568

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1000 (52%), Positives = 675/1000 (67%), Gaps = 55/1000 (5%)

Query: 1    MAVNVAASIASKTYDGTLGATISSLSTVASLPGGMSPLSISGATASFADKNAGSNKDVLL 60
            MA+N+ A I SKTYDGT  AT+S      S P G++ ++ SGA A+F D+ AG+NK V +
Sbjct: 607  MAINLTAGIVSKTYDGTTTATLSGAVNPISTPAGVT-INTSGAIATFNDRFAGTNKAVTI 665

Query: 61   SGVTFSNGSNTINVNGDNYYLNGLSTQLGTITPKSVDVTG-VSVVSKTYDGTTAATLSGT 119
            SGVT   GS         Y+LNGL ++  TI   ++ + G ++   KTY+GTT AT+SGT
Sbjct: 666  SGVTLG-GSE-----AGKYFLNGLDSKTATINKANLTLNGGLTANDKTYNGTTTATISGT 719

Query: 120  ASFSGLIGGDSLSLNLSSATASFADANAGTKAVTLGSYTLGGSSSANYVLNQPS-LSGTI 178
            AS + L    S S+++S ++A+F+D N GT      +Y L GS S NY L QP+ L+  I
Sbjct: 720  ASVAAL---GSDSVSVSLSSANFSDKNVGTNKAVTATYVLTGSDSGNYNLIQPTGLTANI 776

Query: 179  NKANLSLSG----SKTYDGSTAIDGTQLTATGVHGETFTVAGSGGSGNLASKNVQSGAAL 234
            NKAN++++G    SKTYDG+T    +  T      +  ++A S  S N + KN  S   +
Sbjct: 777  NKANVTVTGATANSKTYDGTTTATVSGATVAAFGSDVVSLALS--SANFSDKNAASNKGV 834

Query: 235  ASVTGLSLGSSSNGGLASNYNALGTSGSSISVTAKALTMSGVTASDKVYDGSTTATLNTS 294
             +   L+      G  A+NYN +  +G + ++    LT+ G++A+DK YD +T ATL  +
Sbjct: 835  TATYTLT------GTDANNYNLIQPTGLTATINKANLTVGGISAADKTYDTTTAATLTGT 888

Query: 295  GVSFSGLIGGDAVSLGGSGVGTFANKNAGTNKAVTVSGYTLSGADAGNYLISQPTGLSAS 354
                +  +G D VS+ G+GVGTF+NKNAG+NK VTVSGYTL GADAGNY I QPTG++A+
Sbjct: 889  ASVVA--LGSDVVSVSGTGVGTFSNKNAGSNKVVTVSGYTLGGADAGNYNIVQPTGVTAT 946

Query: 355  ISKANLSVGGITAQGKTYDGLTSATLSGTASVTAIGSDVVSLGGTGVGVFIDKNAGVNKV 414
            I+KANL+V GITA  KTYD  T ATL+GTASVTA+GSDVVS+ G+GVG F +KNAG  K 
Sbjct: 947  INKANLNVSGITANNKTYDATTVATLAGTASVTALGSDVVSVTGSGVGSFANKNAGNAKA 1006

Query: 415  VNVSGYTLSGSDAGNYNLVQPTGLSATISKANLTVSGLTANNKTYDGTTAATLSGTASVT 474
            V VSGY+L+GSDAGNYN+VQPTGL ATISKANL V G++A++KTYD TT ATL+G ASV 
Sbjct: 1007 VTVSGYSLTGSDAGNYNIVQPTGLVATISKANLAVGGISASDKTYDATTTATLTGVASVA 1066

Query: 475  ALGSDTVSVTGTGTASFADKNVGTGKGVTVSGYTLTGTDAGNYNLVSPGGLSANISKANL 534
            ALGSD VSV+G G  +F+DKN G+ K VTV+GYTL G DAGNYN++ P GL+A I+KA+L
Sbjct: 1067 ALGSDVVSVSG-GVGTFSDKNAGSNKAVTVTGYTLGGADAGNYNVIQPTGLTATINKASL 1125

Query: 535  TVAGVSAQSRTYDGTTAATLGGSATVSAFGSDVVSVAGTASASFADKNVGSNKAVLVSGY 594
            TV G+SA  +TYD TT ATL G+ATV+A GSDVVS+ GT   +FA+KN G+NKAVLVSGY
Sbjct: 1126 TVGGLSAADKTYDTTTVATLTGTATVAALGSDVVSLTGTGVGAFANKNAGANKAVLVSGY 1185

Query: 595  TLTGADAGNYNVVQPSGLNATISRADLAVAGLSVANKIYDGTTTATLTGTGSVTALGSDV 654
            +LTG+DA NYN+VQPSGL+ATI++ADL V G+S A+K YD TT ATL+GT SV+ALGSDV
Sbjct: 1186 SLTGSDASNYNIVQPSGLSATINKADLHVTGISAADKTYDATTAATLSGTASVSALGSDV 1245

Query: 655  VTLSGSGAASFANKNVGTGKSIVISGYTLGGTDGGNYNLVAPSNLTANITPLQITVSGIV 714
            V L G+G  +F+NKN G+ K++ ++GYTL GTD GNYN+V P+ LTA+I+   +T   + 
Sbjct: 1246 VALGGAGVGNFSNKNAGSNKAVTVTGYTLTGTDAGNYNVVQPTGLTASISKANLTAGSVS 1305

Query: 715  ANNKTYDGTVAATGNTSGVSLAGKLAGDVINVAATGSFSDKNVGSNKAVTLNSVYSGADA 774
             NNK YDGT AAT   SG +    L  D ++V A G FSDKNVG+ K VT+    SG DA
Sbjct: 1306 VNNKVYDGTTAAT--VSGTASVTALGSDSVSVIAGGVFSDKNVGNGKTVTVTYTLSGTDA 1363

Query: 775  GNYTYIDQTSSQASITPASLNVSGITAANKVFDGTTAATINTGNVALGGLVGGDSVRLSS 834
            GNY  I   +  A+ITPASL VSGITA +K FDGTT A++N     L G V GD V +++
Sbjct: 1364 GNYNVIQPAAQTANITPASLTVSGITANDKPFDGTTTASVNAAGAILTGKVAGDVVTVAA 1423

Query: 835  SGAFTDAAVGRGKTVNLNNLISGADSGNYTLTGQSTALADITAAASTVAAPNVQDAIVRN 894
            +G F+D AVG GK VNL++   GAD GNYT+T Q+T  A IT+A    A      A VRN
Sbjct: 1424 TGVFSDPAVGNGKLVNLSSTYGGADVGNYTITDQATTTASITSALPPAAPSASVPAPVRN 1483

Query: 895  VLTQVQSSVLPPQASAQPQSLSLSSTLVVRS-----QQDDA----APAVGN--ESSSGNA 943
            VL QVQSSVLPPQA++QPQSL LSSTL VR+     QQ D     AP   N  E    N 
Sbjct: 1484 VLAQVQSSVLPPQAASQPQSLDLSSTLTVRAEGREGQQSDGSANDAPRRANTIELGGANV 1543

Query: 944  GGRGGSSLVNTTTGFGTPPPSLNIQNGGIQLPPVAISTPQ 983
            GG G               P L I+NGG QLP  A  T +
Sbjct: 1544 GGAG---------------PVLQIRNGGTQLPDNAFRTTE 1568


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.305    0.122    0.325 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,452,971
Number of extensions: 98156
Number of successful extensions: 522
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 18
Length of query: 983
Length of database: 1,619,870
Length adjustment: 95
Effective length of query: 888
Effective length of database: 1,170,045
Effective search space: 1038999960
Effective search space used: 1038999960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 135 (56.6 bits)