BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0126.p
         (395 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311256|ref|YP_003775348.1| periplasmic trypsin-like serine...    76   5e-15
gi|300313678|ref|YP_003777770.1| periplasmic trypsin-like serine...    75   1e-14
gi|300313338|ref|YP_003777430.1| periplasmic trypsin-like serine...    73   4e-14
gi|300310487|ref|YP_003774579.1| serine proteinase [Herbaspirill...    60   4e-10

>gi|300311256|ref|YP_003775348.1| periplasmic trypsin-like serine
           protease [Herbaspirillum seropedicae SmR1]
          Length = 492

 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 13/159 (8%)

Query: 53  TGSAVVIGPERLV-TNCHVLARASSFKLRRGNLTLGGKLEFP------DPERDLCQVRAE 105
            GS  +I  +  + TN HV+  AS   +     TL  K EF       D   D+  ++ +
Sbjct: 116 VGSGFIISADGFIMTNAHVVEGASEVYV-----TLTDKREFKAKIVGSDTRTDVAVLKID 170

Query: 106 GLKAPAVTIAPARSLRVGQKVFTLGAPRALEETISDGLLSALRLDNEGRLRFLQTSAPIS 165
           G   P + +  +  +RVG+ V  +G+P  LE T++ G++SA   D    L  +QT   ++
Sbjct: 171 GSNLPRLNMGDSDKIRVGEWVLAIGSPFGLENTVTAGIVSAKARDTGDYLPLIQTDVAVN 230

Query: 166 SGSSGGGLFNDKGELIGITTAMIA-GATVQNLSFAVPAE 203
            G+SGG L N KGE+IGI + + +       +SFAVP +
Sbjct: 231 PGNSGGPLINLKGEVIGINSQIYSRSGGFMGISFAVPID 269


>gi|300313678|ref|YP_003777770.1| periplasmic trypsin-like serine
           endoprotease [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 24/179 (13%)

Query: 54  GSAVVIGPERLV-TNCHVLARASSFKLRRGNLTLGGKLEFP------DPERDLCQVRAEG 106
           GS  +I P+ L+ TN HV+  A    ++     L  + EF       D + D+  +R + 
Sbjct: 126 GSGFIISPDGLILTNAHVVDGAQEVVVK-----LTDRREFKAKVLGIDKQSDIAVIRIDA 180

Query: 107 LKAPAVTIAPARSLRVGQKVFTLGAPRALEETISDGLLSAL--RLDNEGRLRFLQTSAPI 164
              P V I     ++VGQ V  +G+P   + T + G++SA    L ++  + F+QT   +
Sbjct: 181 KNLPTVQIGDPSRVKVGQPVLAIGSPYGFDNTATAGIISAKSRSLPDDNYVPFIQTDVAV 240

Query: 165 SSGSSGGGLFNDKGELIGITTAMIA-GATVQNLSFAVPAEWIRDLE---------TRGR 213
           + G+SGG LF+  G++IGI + + +     Q LSF++P +    +E         TRGR
Sbjct: 241 NPGNSGGPLFDLNGQVIGINSQIYSQTGGFQGLSFSIPIDVAMKVEQQLVTHGKVTRGR 299


>gi|300313338|ref|YP_003777430.1| periplasmic trypsin-like serine
           protease [Herbaspirillum seropedicae SmR1]
          Length = 393

 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 8/157 (5%)

Query: 52  STGSAVVIGPE-RLVTNCHVLARASSFKLRRGN-LTLGGKLEFPDPERDLCQVRAEGLKA 109
           S GS V++ P+  ++TN HV+  A   ++   +      K+   DPE DL  ++ +    
Sbjct: 112 SLGSGVIVSPQGYILTNNHVVEAADKIEVALADGRKASAKVVGIDPETDLAVIKIDLPNL 171

Query: 110 PAVTIAPARSLRVGQKVFTLGAPRALEETISDGLLSALRLDNEG---RLRFLQTSAPISS 166
           PA+T+    +  VG  V  +G P  + +T++ G++SAL  ++ G      F+QT A I+ 
Sbjct: 172 PAITLGHPENSSVGDVVLAIGNPFGVGQTVTMGIVSALGRNHLGINTFENFIQTDAAINP 231

Query: 167 GSSGGGLFNDKGELIGITTAMIAGATVQNL--SFAVP 201
           G+SGG L +  G L+GI TA I   T  NL   FA+P
Sbjct: 232 GNSGGALVDTNGNLLGINTA-IYSRTGGNLGIGFAIP 267


>gi|300310487|ref|YP_003774579.1| serine proteinase [Herbaspirillum
           seropedicae SmR1]
          Length = 438

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 21/160 (13%)

Query: 53  TGSAVVIGPE-RLVTNCHVLARASSFKLRRGNLTLGGKLEFP------DPERDLCQVRAE 105
           +G+   IG    L++N HV+  A S ++R     L G  E P      D  RD+  ++ E
Sbjct: 270 SGTGFYIGQSGWLLSNQHVVGTARSVRVR-----LPGGRELPAEVLRVDAARDVALLKTE 324

Query: 106 GLKAPAVTIAPARSLR--VGQKVFTLGAP--RALEETISDGLLSALRLDNEGRLRFLQTS 161
               P V   P R     +G+ V+ LG+P       T++ G+LS +RL N     FLQ+ 
Sbjct: 325 ---PPGVRPLPLRLDEPGLGEDVYALGSPLGDTFNTTLTRGILSGVRLLNGQE--FLQSD 379

Query: 162 APISSGSSGGGLFNDKGELIGITTAMIAGATVQNLSFAVP 201
             I  GSSGG L +  G+++GIT A +    +  ++F +P
Sbjct: 380 VAILPGSSGGPLLDRSGQVVGITVAGLGARGMAGMNFFIP 419


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 963,895
Number of extensions: 36883
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 4
Length of query: 395
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 308
Effective length of database: 1,207,925
Effective search space: 372040900
Effective search space used: 372040900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)