BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0121.p
         (173 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum ser...    58   5e-10
gi|300310091|ref|YP_003774183.1| outer membrane protein and rela...    54   7e-09

>gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 267

 Score = 57.8 bits (138), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 4/113 (3%)

Query: 62  QGVL----AKRSVYFDYDSYTVKPEYRTVIENHAKYLVAHKDRKVIIQGNTDDRGGAEYN 117
           QGVL    A R V F+    T+ PE + +++  A  ++  K R+V I GNTD+ G    N
Sbjct: 151 QGVLDNTLANRVVSFESGRATLTPEGKRILDEIAATMLQLKGRRVEIIGNTDNEGLRASN 210

Query: 118 LALGQKRAEAVRKALVLLGVSDAQVEAVSFGKEKPKALGQDEASYAENRRADI 170
           ++L   RA+AV+  L   GV D+ +     G ++P A        A NRR + 
Sbjct: 211 ISLSLARADAVKAYLSTKGVDDSLLTTSGQGPDRPVASNATSEGRARNRRIEF 263


>gi|300310091|ref|YP_003774183.1| outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Herbaspirillum
           seropedicae SmR1]
          Length = 271

 Score = 53.9 bits (128), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%)

Query: 65  LAKRSVYFDYDSYTVKPEYRTVIENHAKYLVAHKDRKVIIQGNTDDRGGAEYNLALGQKR 124
           LA R V F+    T+ PE + +++  A  ++  K R V I GNTD+ G    N++L   R
Sbjct: 162 LANRVVSFESGQATLTPEGKRILDEIAATMLKLKGRHVEIIGNTDNEGLRASNISLSLAR 221

Query: 125 AEAVRKALVLLGVSDAQVEAVSFGKEKPKALGQDEASYAENRRADI 170
           A+AV+  L   GV ++ +     G ++P A        A+NRR + 
Sbjct: 222 ADAVKAYLGAKGVDESLLSTSGQGPDRPVASNATAEGRAKNRRIEF 267


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.128    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 478,635
Number of extensions: 18707
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 3
Length of query: 173
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,245,805
Effective search space: 117105670
Effective search space used: 117105670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)