BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0120.p
         (432 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310549|ref|YP_003774641.1| periplasmic component of the To...   823   0.0  

>gi|300310549|ref|YP_003774641.1| periplasmic component of the Tol
           biopolymer transport system protein [Herbaspirillum
           seropedicae SmR1]
          Length = 428

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/432 (95%), Positives = 419/432 (96%), Gaps = 4/432 (0%)

Query: 1   MIKARYLTLSLTRMATAMVAVAGLSFAPASQAQIRFEITGVGASQIPVAIAAFPGEESAP 60
           MIKARYLT     +A    AVAGLSFAPASQAQIRFEITGVGASQIP+AI AFPGEESAP
Sbjct: 1   MIKARYLT----SLAATAAAVAGLSFAPASQAQIRFEITGVGASQIPIAITAFPGEESAP 56

Query: 61  QQITSVVKADLARSGIFKLIDNSDALSDSSAINYADWQKRGANALAVGSVTRLADGRFDV 120
           QQITSVVKADLARSG+FKLIDN DALSDSSA+NYADWQKRGANALAVGSVTRLADGRFDV
Sbjct: 57  QQITSVVKADLARSGVFKLIDNGDALSDSSAVNYADWQKRGANALAVGSVTRLADGRFDV 116

Query: 121 RYRLFDTVQSSQLSALSIGAQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGNE 180
           RYRLFDTVQSSQLSALSIGAQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSG E
Sbjct: 117 RYRLFDTVQSSQLSALSIGAQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGGE 176

Query: 181 YRLEVADADGEGTQVALRSNEPIISPSWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIV 240
           YRLEVADADGEGTQVALRSNEPIISPSWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIV
Sbjct: 177 YRLEVADADGEGTQVALRSNEPIISPSWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIV 236

Query: 241 ANFKGSNSAPAWSPDGSRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDG 300
           ANFKGSNSAPAWSPDGSRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDG
Sbjct: 237 ANFKGSNSAPAWSPDGSRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDG 296

Query: 301 GSVYFTSDRSGGPQVYKVGLDGGSPQRVTFNGSYNISPRISPDGKTLAFISRRDGLFQLY 360
           GS+YFTSDRSGGPQVYKVGLDGGSPQRVTFNGSYNISPRISPDGKTLAFISRRDG FQLY
Sbjct: 297 GSIYFTSDRSGGPQVYKVGLDGGSPQRVTFNGSYNISPRISPDGKTLAFISRRDGQFQLY 356

Query: 361 ALDLTNGQEIRLSDGSRDQSPSFAPNGKYIMYATESGRRGSLAVVSVDGRIKQRLTTQAG 420
           ALDLTNGQEIRLSDGSRDQSPSFAPNGKYIMYATE+GRRGSLAVVSVDGRIKQRLTTQAG
Sbjct: 357 ALDLTNGQEIRLSDGSRDQSPSFAPNGKYIMYATEAGRRGSLAVVSVDGRIKQRLTTQAG 416

Query: 421 DIREPTWGPFMK 432
           DIREPTWGPFMK
Sbjct: 417 DIREPTWGPFMK 428


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,381,252
Number of extensions: 61029
Number of successful extensions: 187
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 344
Effective length of database: 1,203,190
Effective search space: 413897360
Effective search space used: 413897360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)