BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0117.p (233 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310552|ref|YP_003774644.1| MotA/TolQ/ExbB proton channel f... 431 e-122 gi|300309940|ref|YP_003774032.1| biopolymer transport transmembr... 96 3e-21 gi|300310025|ref|YP_003774117.1| biopolymer transport transmembr... 89 2e-19 gi|300312127|ref|YP_003776219.1| biopolymer transport transmembr... 84 1e-17 gi|300310500|ref|YP_003774592.1| biopolymer transport ExbB-like ... 55 4e-09 >gi|300310552|ref|YP_003774644.1| MotA/TolQ/ExbB proton channel family protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 431 bits (1109), Expect = e-122, Method: Compositional matrix adjust. Identities = 230/234 (98%), Positives = 233/234 (99%), Gaps = 1/234 (0%) Query: 1 MNVTQDLSFISLIANASVLVQLVMLLLLSASIISWTYIFRKMFTIRSARVQTEEFERVFW 60 MNVTQDLSFISLIANASVLVQLVMLLLLSASIISWTYIFRKMFTIR+ARVQTEEFERVFW Sbjct: 1 MNVTQDLSFISLIANASVLVQLVMLLLLSASIISWTYIFRKMFTIRAARVQTEEFERVFW 60 Query: 61 SGGNLSALYQDALSNRRKAG-AGGALERIFQAGMGEFTKAKASVAARGGAVEPALLLDGA 119 SGGNLSALYQDALSNRRKAG AGGALERIFQAGMGEFTKAKASVAARGGAV+P+LLLDGA Sbjct: 61 SGGNLSALYQDALSNRRKAGGAGGALERIFQAGMGEFTKAKASVAARGGAVDPSLLLDGA 120 Query: 120 RRAMRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVA 179 RRAMRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVA Sbjct: 121 RRAMRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVA 180 Query: 180 PGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESFIEEFSNILQRQAR 233 PGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESFIEEFSNILQRQAR Sbjct: 181 PGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESFIEEFSNILQRQAR 234 >gi|300309940|ref|YP_003774032.1| biopolymer transport transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 231 Score = 95.5 bits (236), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 110/237 (46%), Gaps = 22/237 (9%) Query: 5 QDLSFISLIANASVLVQLVMLLLLSASIISWTYIFRKMFTIRSARVQTEEFERVFWSGGN 64 Q++ F A + V LLL SI SW YI K + R + ER FW Sbjct: 3 QNIGFAHYWAQGDAVSHSVAYLLLIMSIASWYYILSKAWAAWRIRRGSNALER-FWQAPT 61 Query: 65 LSALYQDALSNRRKAGAGGALERIFQAGMGEFTKAKASVAAR-------GGAVEPALLLD 117 L+ DA + ++ + E+I+ M E A + R A +P L+ Sbjct: 62 LA----DATAAMQRLDS----EQIYTP-MAERAAEAADIGTRQQGTPSLNAATDPGELIT 112 Query: 118 GARRAMRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAA 177 R +R R LE L LASVGS +P+VGLFGTVWGI +A ++ + Sbjct: 113 ---RTLRREINRVSARLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDK 169 Query: 178 VAPGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAI-RFESFIEEFSNILQRQAR 233 VA + EALI TA+GL AIPAV+AYN ++ I+R+ + + F + L R Sbjct: 170 VAGPVGEALIMTALGLLVAIPAVLAYNAFTR-INRVVLAELDGFAHDLHAYLTTGER 225 >gi|300310025|ref|YP_003774117.1| biopolymer transport transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/198 (33%), Positives = 93/198 (46%), Gaps = 18/198 (9%) Query: 11 SLIANASVLVQLVMLLLLSASIISWTYIFRKMFTIRSARVQTEEFERVFWSGGNL----S 66 SL A + + V +LLL+ SI SW I K + R + FW NL + Sbjct: 10 SLWAQGDFVTKGVAVLLLAMSIASWYVIITKALQLLRLRKASAAAGHQFWDTTNLPEGVA 69 Query: 67 ALYQDALSNRRKAGAGGALERIFQAGMGEFTKAKASVAARGGAVEPALLLDGARRAMRAA 126 L QD + +AG+ T A +G + + D ++R A Sbjct: 70 TLGQD-----------NPFAEVAKAGV---TAMSHHTAHKGHLHDQLSVSDWVTLSLRQA 115 Query: 127 YQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVAPGIAEAL 186 L++ +A LASVGS +P+VGLFGTVWGI +A + QA++ VA + EAL Sbjct: 116 IDEASGKLQAGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGTTGQASIDKVAGPVGEAL 175 Query: 187 IATAIGLFAAIPAVVAYN 204 I TA+GL AIPA YN Sbjct: 176 IMTALGLAVAIPATFGYN 193 >gi|300312127|ref|YP_003776219.1| biopolymer transport transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 84.0 bits (206), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 100/200 (50%), Gaps = 34/200 (17%) Query: 17 SVLVQLVMLLLLSASIISW-TYIFRKMFTIRSARVQTEEFERVFWSG----GNLSALYQD 71 V+ + ++ +LL S +SW I + M R +R+ + + FW+ G ++A+ Sbjct: 14 DVVTRFLITILLGMSSVSWIVMIVKGMANRRLSRIGLKAHKE-FWAAHSIEGGIAAI--- 69 Query: 72 ALSNRRKAGAGGALERIFQAGMGEFTKAKASVAARGGAVEPALLLDGARR-------AMR 124 AG I A A+V A+ +P LL+G+ +R Sbjct: 70 ------GAGTDNPYSNI----------ATAAVEAQAQKDQP--LLEGSTSNTEWVAYCVR 111 Query: 125 AAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVAPGIAE 184 ++ L+ LA LAS+GS SP++GLFGTVWGI +A + QA+L VA + E Sbjct: 112 NELDEQIAHLQGGLAVLASIGSTSPFIGLFGTVWGIYHALIAIGASGQASLDHVAGPVGE 171 Query: 185 ALIATAIGLFAAIPAVVAYN 204 +L+ TA+GLF AIPAV+ YN Sbjct: 172 SLVMTAVGLFVAIPAVLGYN 191 >gi|300310500|ref|YP_003774592.1| biopolymer transport ExbB-like transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 201 Score = 55.1 bits (131), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 88/215 (40%), Gaps = 36/215 (16%) Query: 27 LLSASIISWTYIFRKMFTIRSARVQTEEF----ERVFWSGGNLSALYQDALSNRRKAGAG 82 LL ASII + ++ +R +R+ + RV+ SG ++ D L G Sbjct: 15 LLIASIIGLALVIERLVYLRRSRILPPDLLNQVVRVYQSG-RITDDVADKLEQNSPLG-- 71 Query: 83 GALERIFQAGMGEFTKAKASVAARGGAVEPALLLDGARRAMRAAYQREMDA----LESHL 138 + AG+ +D R M+ A + A LE L Sbjct: 72 ----HVLAAGLRN--------------------VDAPREVMKEAIEEAGQAAAHRLERFL 107 Query: 139 AFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVAPGIAEALIATAIGLFAAIP 198 L ++ S++P +GLFGTV G++ F N A +A GI+ AL T GL A+P Sbjct: 108 TTLGTIASLAPLMGLFGTVVGMIEIFAS-QNAAGTNPAQLAHGISIALYNTGFGLAIAMP 166 Query: 199 AVVAYNRYSHDIDRLAIRFESFIEEFSNILQRQAR 233 A+V Y + +D + E +F +I+ R Sbjct: 167 ALVFYRHFRALVDGFVVDMEQQAVKFVDIVHDVRR 201 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 642,323 Number of extensions: 25805 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 5 Length of query: 233 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 151 Effective length of database: 1,231,600 Effective search space: 185971600 Effective search space used: 185971600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)