BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0110.p
         (228 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310558|ref|YP_003774650.1| hypothetical protein Hsero_1226...   391   e-110

>gi|300310558|ref|YP_003774650.1| hypothetical protein Hsero_1226
           [Herbaspirillum seropedicae SmR1]
          Length = 231

 Score =  391 bits (1005), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/227 (81%), Positives = 199/227 (87%)

Query: 2   VSNHDQQLARRLLCPICQRALTACICHWTSPIDHAVDVLILQHPLEVSNAKNSVRLLHLS 61
           +  H Q  +RRLLCPICQRA+TACICHWTSPIDHA DVLILQHPLEV NAKNSVRLLHLS
Sbjct: 5   LDQHAQPASRRLLCPICQRAMTACICHWTSPIDHAFDVLILQHPLEVGNAKNSVRLLHLS 64

Query: 62  LPYSKLVVGSVFDAEELHAMMHAPSRLRGVSSTEPVHPVLLYTDDVCTPETRYFDARTMM 121
           LP SKLVVGSVFD +EL A++H PSRLR VS +E VHPVLLYTDD  T  T YFDARTM 
Sbjct: 65  LPASKLVVGSVFDTDELEALLHGPSRLRNVSPSEKVHPVLLYTDDASTSATTYFDARTMR 124

Query: 122 VDKQETLKRVRLVIIDGTWRKSRKMLFENPILQTLPRMMLIDTPTSRYTIRKSHKPEQLA 181
           V+ QE  +RVRLVI+DGTWRKSRKMLFENPILQTLPR++L DTP SRYTIRKSHKPEQL+
Sbjct: 125 VEGQEQFQRVRLVILDGTWRKSRKMLFENPILQTLPRLVLSDTPASRYTIRKSHKPEQLS 184

Query: 182 TLEATGYALMQLERNSEKYHPLLTAFDNFVLQQGYMRMHGQATRRSE 228
           TLEA GYALMQLERNSEKYHPLLTAFDNFVLQQGYMR+HGQA RR E
Sbjct: 185 TLEAVGYALMQLERNSEKYHPLLTAFDNFVLQQGYMRLHGQAVRRGE 231


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 663,374
Number of extensions: 24556
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,231,600
Effective search space: 179813600
Effective search space used: 179813600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 129 (54.3 bits)