BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0109.p
         (312 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310559|ref|YP_003774651.1| TP-dependent DNA helicase RecG ...   629   0.0  
gi|300312329|ref|YP_003776421.1| transcription-repair ATP-depend...   157   1e-39

>gi|300310559|ref|YP_003774651.1| TP-dependent DNA helicase RecG
           protein [Herbaspirillum seropedicae SmR1]
          Length = 722

 Score =  629 bits (1621), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/312 (98%), Positives = 310/312 (99%)

Query: 1   VQFENLGLVIVDEQHRFGVGQRLALRNKSFNPADREAAAVPHQLMMSATPIPRTLAMTYY 60
           VQFENLGLVIVDEQHRFGVGQRLALRNKSFNPAD ++ AVPHQLMMSATPIPRTLAMTYY
Sbjct: 411 VQFENLGLVIVDEQHRFGVGQRLALRNKSFNPADHDSPAVPHQLMMSATPIPRTLAMTYY 470

Query: 61  ADLEVSVIDELPPGRSPIVTRVIDQNRRDEVIERVHAAALEGKQIYWVCPLIEESEALQL 120
           ADLEVSVIDELPPGRSPIVTRVIDQNRRDEVIERVHAAALEGKQIYWVCPLIEESEALQL
Sbjct: 471 ADLEVSVIDELPPGRSPIVTRVIDQNRRDEVIERVHAAALEGKQIYWVCPLIEESEALQL 530

Query: 121 QTATDTHAALSAALPDLQIGLVHGRMKPVEKQIVMEGFSRGAIHLLVATTVIEVGVDVPN 180
           QTATDTHAALSAALPDLQIGLVHGRMKPVEKQ+VMEGFSRGAIHLLVATTVIEVGVDVPN
Sbjct: 531 QTATDTHAALSAALPDLQIGLVHGRMKPVEKQMVMEGFSRGAIHLLVATTVIEVGVDVPN 590

Query: 181 ASLMVIEHAERFGLSQLHQLRGRVGRGSAASVCLLLYQGPLGGTAKQRLATMRETTDGFE 240
           ASLMVIEHAERFGLSQLHQLRGRVGRGSAASVCLLLYQGPLGGTAKQRLATMRETTDGFE
Sbjct: 591 ASLMVIEHAERFGLSQLHQLRGRVGRGSAASVCLLLYQGPLGGTAKQRLATMRETTDGFE 650

Query: 241 IARRDLDIRGPGEFLGARQSGEAMLRFADLATDQWLVEKARDTAQALLQHAPDIVDRHLA 300
           IARRDLDIRGPGEFLGARQSGEAMLRFADLATDQWLVEKARDTAQALLQHAPDIVDRHLA
Sbjct: 651 IARRDLDIRGPGEFLGARQSGEAMLRFADLATDQWLVEKARDTAQALLQHAPDIVDRHLA 710

Query: 301 RWLGGREDFLKV 312
           RWLGGRED+LKV
Sbjct: 711 RWLGGREDYLKV 722


>gi|300312329|ref|YP_003776421.1| transcription-repair ATP-dependent
           coupling factor [Herbaspirillum seropedicae SmR1]
          Length = 1145

 Score =  157 bits (397), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/271 (39%), Positives = 146/271 (53%), Gaps = 31/271 (11%)

Query: 1   VQFENLGLVIVDEQHRFGVGQRLALRNKSFNPADREAAAVPHQLMMSATPIPRTLAMTYY 60
           V+F  LGLVI+DE+HRFGV Q+ AL++           A    L ++ATPIPRTL M   
Sbjct: 720 VKFSRLGLVIIDEEHRFGVRQKEALKSLR---------AEVDVLTLTATPIPRTLGMALE 770

Query: 61  ADLEVSVIDELPPGRSPIVTRVIDQNRRDEVIERVHAAALE----GKQIYWVCPLIEESE 116
              + SVI   P  R  I T V     R E    +  A L     G Q+Y++   +E   
Sbjct: 771 GLRDFSVIATAPQKRLAIKTFV-----RAEQESTIREACLRELKRGGQVYFLHNEVE--- 822

Query: 117 ALQLQTATDTHAALSAALPDLQIGLVHGRMKPVEKQIVMEGFSRGAIHLLVATTVIEVGV 176
                T  +  AAL   LP+ +IG+ HG+M   + + VM  F     ++L+ TT+IE G+
Sbjct: 823 -----TIANRKAALEQLLPEARIGVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGI 877

Query: 177 DVPNASLMVIEHAERFGLSQLHQLRGRVGRGSAASVCLLLYQG--PLGGTAKQRLAT--- 231
           DVP A+ +++  A++FGL+QLHQLRGRVGR    +   LL Q    L   A++RL     
Sbjct: 878 DVPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQ 937

Query: 232 MRETTDGFEIARRDLDIRGPGEFLGARQSGE 262
           M E   GF +A  DL+IRG GE LG  QSGE
Sbjct: 938 MEELGSGFYLAMHDLEIRGAGEVLGDHQSGE 968


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,024,520
Number of extensions: 43808
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,217,395
Effective search space: 276348665
Effective search space used: 276348665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)