BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0105.p (605 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310562|ref|YP_003774654.1| composite two-component transcr... 810 0.0 gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 145 6e-36 gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 127 4e-30 gi|300313022|ref|YP_003777114.1| two component sensor histidine ... 122 6e-29 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 115 1e-26 >gi|300310562|ref|YP_003774654.1| composite two-component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 604 Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/605 (72%), Positives = 492/605 (81%), Gaps = 19/605 (3%) Query: 11 PVHAAGDDTLHRVRVEQVRLLCGNLGSSVLPGILVALLVAYALRESAGLWPLLAWAAGVI 70 P A D H+++VEQ+RLLCGNLGSSV+PGILVALL+ YAL E AGLWPLLAWA GVI Sbjct: 9 PGTLAPDAVAHQIQVEQIRLLCGNLGSSVVPGILVALLIVYALGERAGLWPLLAWAGGVI 68 Query: 71 ASKLFDYADARRMLRMEITPANIDQIKRRLVVLHGIDGAAWGLLAPLALDTASPGGSILL 130 SKL D+ADARR+L M ITP I ++RRL++LHG+DGAAWG LA +ALDT SPGGSIL Sbjct: 69 VSKLIDFADARRILAMSITPQQIGAVRRRLMLLHGLDGAAWGALAAVALDTGSPGGSILA 128 Query: 131 IGVLAGVAGNSMSILSPVLPAFVSFCLVELGMLAASAWHTHEDALEVLAVAALLYVASLM 190 IGVLAGVAGNSMSILSPVLP F+SFC+VELGMLA W H+ +L+VL+ AALLYVASL+ Sbjct: 129 IGVLAGVAGNSMSILSPVLPVFISFCIVELGMLAGWVWIMHDPSLQVLSAAALLYVASLL 188 Query: 191 VQARNSAGAARAAIMLRFENNALIERLQRESEKTQQALQQAEQANAAKSRFLAGASHDLR 250 VQARNSA AA+AAI LR+EN LI RLQ ESE+TQQAL QAEQANAAKS+FLA ASHDLR Sbjct: 189 VQARNSARAAQAAITLRYENTELIRRLQHESERTQQALAQAEQANAAKSKFLAAASHDLR 248 Query: 251 QPIHAQGLFLEVLSNTPLDPMQREVVGRLRNAADNCADMLHTLLDYSRIEAGVVTPQLAP 310 QPIHAQGLFLEVL+ TPLDPMQR+VV +LR AADNCADMLHTLLDYSRIEAGVV PQ+ Sbjct: 249 QPIHAQGLFLEVLNTTPLDPMQRDVVAKLRRAADNCADMLHTLLDYSRIEAGVVEPQVTR 308 Query: 311 FRPQALIHRISREMAAQAEARGLVFRTRESQAVASADAGLTELILRNLVSNAIRYTERGG 370 FR QAL+ RIS+EMAAQAEA+GLVFR RES+AV SADA LTELILRNLVSNAIRYT+RGG Sbjct: 309 FRVQALVGRISQEMAAQAEAKGLVFRCRESRAVVSADASLTELILRNLVSNAIRYTDRGG 368 Query: 371 VLVACRQRGPQVWLEVWDTGIGIAPEQQQEIFREFHQLGNPERDHNKGMGLGLAIAEGLA 430 +LVACRQRG Q WLEVWDTG GI+ QQQEIF EF QLGNPERDH KG+GLGLAIA+GLA Sbjct: 369 ILVACRQRGGQAWLEVWDTGAGISAAQQQEIFEEFRQLGNPERDHRKGLGLGLAIAQGLA 428 Query: 431 KMQGLQLTVQSRPGRGSVFRLQLP----------AALMPLPAHPGKPAPALTAQRDLHGL 480 ++QGL L+VQS PGRGSVFRL LP AAL PLP + DLHGL Sbjct: 429 RLQGLTLSVQSVPGRGSVFRLTLPLARQDDASLAAALRPLPP---------PVRHDLHGL 479 Query: 481 RILLIDDDQRVRDSMAQLLGQWGCHCIDVEGLEEAEALAHSQEFDVVISDYRLRAHRNGT 540 R+LLIDDDQRVR+SMAQLL WGC C E LE+AEALA ++VISDYRLR H NGT Sbjct: 480 RVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAEALAQQHLPELVISDYRLRQHSNGT 539 Query: 541 EAIAAVRAASQAHVGALLITGDTAPARLREASESGIPMLHKPVAPAQLWEALLRLAAKAG 600 +AIA VR V ALLITGDTAPARLREA+ESGIPMLHKPVAPAQLWE L RL+ +A Sbjct: 540 DAIAVVRRVLGKPVSALLITGDTAPARLREAAESGIPMLHKPVAPAQLWEQLQRLSGQAR 599 Query: 601 GVHPQ 605 HP+ Sbjct: 600 QAHPR 604 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 145 bits (367), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 121/386 (31%), Positives = 200/386 (51%), Gaps = 19/386 (4%) Query: 214 IERLQRESEKTQQALQQAEQANAAKSRFLAGASHDLRQPIHAQGLFLEVLS-NTPLDPMQ 272 IE ++ + Q+A + AE AN AKSRF+AG SH+LR P+++ + ++L + + P + Sbjct: 664 IEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPAR 723 Query: 273 REVVGRLRNAADNCADMLHTLLDYSRIEAGVVTPQLAPFRPQALIHRISREMAAQAEARG 332 ++ +G +R + ++ ++ LLD ++IEAG + +A + +I A QAE +G Sbjct: 724 KDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKG 783 Query: 333 LVFRTRES---QAVASADAGLTELILRNLVSNAIRYTERGGVLVACRQRGPQVWLEVWDT 389 L FR +S + AD IL NL+ NA+++T+ GGV + R + +V DT Sbjct: 784 LHFRFDKSGRLPQIVHADQKRLRQILINLLGNAVKFTDHGGVTLRLRYAREIAYFDVIDT 843 Query: 390 GIGIAPEQQQEIFREFHQLGNPERDHNKGMGLGLAIAEGLAKMQGLQLTVQSRPGRGSVF 449 GIGIA + ++ IF F + + G GLGLAI+ L + G +L+VQS+ G+GS F Sbjct: 844 GIGIADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELSVQSQVGQGSSF 903 Query: 450 RLQ--LPAALMPLPAHPGKPAPALTAQRDLHGLRILLIDDDQRVRDSMAQLLGQWGCHCI 507 L+ LP +P P + + A H IL++DD R + +L G Sbjct: 904 HLKIYLPEVHVPRPRIKLEDQMSGYAGPSRH---ILVVDDQASQRRLLKDMLMPLGFTVS 960 Query: 508 DVE-GLEEAEALAHSQEFDVVISDYRLRAHRNGTEAIAAVRAASQAHVGALLITGDTAPA 566 + + GL E L H+ D+V+ D + +G A+RA A + LL++ + A Sbjct: 961 EADSGLACMETLGHALP-DLVLLDIAM-PQMDGWSVARAIRARGLAQLPILLVSAN-AFE 1017 Query: 567 RLREASESGIPMLH----KPVAPAQL 588 L E +E P+++ KPV+ +L Sbjct: 1018 NLHERNEP--PLVNDFVVKPVSYHEL 1041 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 108/374 (28%), Positives = 174/374 (46%), Gaps = 57/374 (15%) Query: 229 QQAEQANAAKSRFLAGASHDLRQPIHAQGLFLEVLSNTPLDPMQREVVGRLRNAADNCAD 288 ++A+ AN AKS FLA SH++R P++ E+L + L QR+ + A Sbjct: 339 EEADHANEAKSHFLAMVSHEIRTPMNGILGLSELLMESGLSSKQRDYADSIHGATGGLVR 398 Query: 289 MLHTLLDYSRIEAGVVTPQLAPFRPQALIHRISREMAAQAEARGLVFRTR----ESQAVA 344 +++ +LD+S+IE+G + ++ F P L+ +S + + + F E+ +V Sbjct: 399 IINDILDFSKIESGKLDLEMVAFHPVRLVQELSDLYRPSLQRKDVQFDLHLDCPENLSVV 458 Query: 345 SADAGLTELILRNLVSNAIRYTERGGVLVACRQR----GPQVW---LEVWDTGIGIAPEQ 397 A L + +L NL+SNAI++T+ G V ++ R GP W + DTGIGI+PE Sbjct: 459 GDPARLKQ-VLGNLLSNAIKFTQAGHVQLSMSARQDESGPSRWRLFFAITDTGIGISPEA 517 Query: 398 QQEIFREFHQLGNPERDHNKGMGLGLAIAEGLAKMQGLQLTVQSRPGRGSVFRLQL--PA 455 Q++FR F Q + G GLGLAI++ L ++ G + QS PG + F ++ P Sbjct: 518 LQQLFRPFAQADSSISRRFGGTGLGLAISKNLVELMGGTIACQSIPGESTRFSFEILCPE 577 Query: 456 ALMPLPA-------------------------------HPGKPAPALTAQRD-------- 476 A P P P AP + D Sbjct: 578 ASTPAPEPVSEAAAPAPATALATTAPALPPAAEAPGTLMPPDNAPQPPSNVDASATVLPS 637 Query: 477 -LHGLRILLIDDDQRVRDSMAQLLGQWGCHCIDVE-GLEEAEALAHSQEFDVVISDYRLR 534 L G RIL+ +D + R + LL + GC +VE GL+ EA+ + +D+V+ D + Sbjct: 638 LLAGARILMAEDTEINRQLLRILLARKGCILQEVENGLQAVEAI-RTGHYDLVLMDCMMP 696 Query: 535 AHRNGTEAIAAVRA 548 +G +A A +RA Sbjct: 697 IM-DGYQATAEIRA 709 >gi|300313022|ref|YP_003777114.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 556 Score = 122 bits (307), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 124/234 (52%), Gaps = 12/234 (5%) Query: 229 QQAEQANAAKSRFLAGASHDLRQPIHA----QGLFLEVLSNTPLDPMQREVVGRLRNAAD 284 ++A QAN AKSRFL+ SH+ R P++ E L +PL Q V + ++ + Sbjct: 322 REALQANQAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPL--AQYAVA--IHDSGN 377 Query: 285 NCADMLHTLLDYSRIEAGVVTPQLAPFRPQALIHRISREMAAQAEARGLVFRTRESQAVA 344 D+++ +L+ + +E V L P + L+ + QA+A+GL R + V Sbjct: 378 RLLDLVNAILEVTELEDRRVAVHLDPANIRELVGQAIARHYPQAQAKGLPLECRIGEDVP 437 Query: 345 S---ADAGLTELILRNLVSNAIRYTERGGVLVACRQRGPQ-VWLEVWDTGIGIAPEQQQE 400 D + +L NL+SNA+RYT+ G V+V + GPQ + + + DTGIGIA QQ + Sbjct: 438 QILVCDERKIQRVLDNLISNAVRYTDHGRVMVEVERSGPQQLTMRIKDTGIGIAASQQND 497 Query: 401 IFREFHQLGNPERDHNKGMGLGLAIAEGLAKMQGLQLTVQSRPGRGSVFRLQLP 454 IF +F Q + R +G GLGL IA+ L + G QL +QS +GS F LP Sbjct: 498 IFEKFTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQHQGSTFSFTLP 551 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/259 (33%), Positives = 130/259 (50%), Gaps = 15/259 (5%) Query: 209 ENNALIERLQRESEKTQQAL----QQAEQANAAKSRFLAGASHDLRQPIHAQGLFLEVLS 264 E L+E + + KTQ L + E+AN KS FLA SH+LR P+++ + ++L+ Sbjct: 442 EQTQLLELQKDDLAKTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKLLA 501 Query: 265 NTP---LDPMQREVVGRLRNAADNCADMLHTLLDYSRIEAGV--VTPQLAPFRPQALIHR 319 + L Q + +A ++ +++ +LD S++EAG + P+ P L Sbjct: 502 DNKQGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVPESFPL--TKLADE 559 Query: 320 ISREMAAQAEARGLVFRTRESQAV---ASADAGLTELILRNLVSNAIRYTERGGV-LVAC 375 +S A A+ +GL F+ V D IL+NL+SNAI++TE+G V L Sbjct: 560 LSASFAITAQQKGLGFKVEVEPGVPQRMETDIQRLGQILKNLLSNAIKFTEKGEVSLRIY 619 Query: 376 RQRGPQVWLEVWDTGIGIAPEQQQEIFREFHQLGNPERDHNKGMGLGLAIAEGLAKMQGL 435 G ++ V DTGIGI +Q Q IF F Q G GLGL+I+ LA + G Sbjct: 620 PDAGGRIAFAVRDTGIGIGEDQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGG 679 Query: 436 QLTVQSRPGRGSVFRLQLP 454 + V SR G GS+F L LP Sbjct: 680 DIRVTSRLGEGSIFTLSLP 698 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,731,601 Number of extensions: 69337 Number of successful extensions: 462 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 417 Number of HSP's successfully gapped: 33 Length of query: 605 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 514 Effective length of database: 1,188,985 Effective search space: 611138290 Effective search space used: 611138290 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)