BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0103.p (493 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 159 5e-40 gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 157 2e-39 gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 142 5e-35 gi|300313022|ref|YP_003777114.1| two component sensor histidine ... 132 8e-32 gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 128 1e-30 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 159 bits (402), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 97/241 (40%), Positives = 142/241 (58%), Gaps = 6/241 (2%) Query: 251 LAEKNRALQEAVESRDRFLANTSHELRTPLNAILGFTEILLTRMGGPLTADQEQQLQTVH 310 L EK L+ A + + FLAN SHELRTPLN+ L ++L G L+ +Q + QT+ Sbjct: 461 LVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKLLADNKQGNLSDEQVRFAQTIS 520 Query: 311 ESAQHLLGLITSLLDVSRMEAEAEDLIPEALLCSELIEEAVAVLRPAAMKKGL--QLELA 368 + LL LI +LD+S+MEA D++PE+ ++L +E A A +KGL ++E+ Sbjct: 521 SAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKLADELSASFAITAQQKGLGFKVEVE 580 Query: 369 PYAGEVRIHANRRALAQILMHLVGNAIKFTDRGQVLVKLRQQRHDKTLTSWIEVSDSGCG 428 P + R+ + + L QIL +L+ NAIKFT++G+V +++ D V D+G G Sbjct: 581 PGVPQ-RMETDIQRLGQILKNLLSNAIKFTEKGEVSLRI---YPDAGGRIAFAVRDTGIG 636 Query: 429 ISEQDQQKLFRAFTQLDATASRKHEGMGQGLYLSQKLANLMGGTITVQSRVGTGSRFTLC 488 I E Q +F AF Q D + RK+ G G GL +S+ LA+L+GG I V SR+G GS FTL Sbjct: 637 IGEDQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIRVTSRLGEGSIFTLS 696 Query: 489 L 489 L Sbjct: 697 L 697 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 157 bits (397), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 90/252 (35%), Positives = 150/252 (59%), Gaps = 9/252 (3%) Query: 238 VRDISDRKRIEEDLAEKNRALQEAVESRDRFLANTSHELRTPLNAILGFTEILLTRMGGP 297 +++I K+ + +L A + A ++ RF+A SHELRTPLN+ILG+ +IL + Sbjct: 661 LQEIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQIL--HVDAT 718 Query: 298 LTADQEQQLQTVHESAQHLLGLITSLLDVSRMEAEAEDLIPEALLCSELIEEAVAVLRPA 357 + ++ + + S +HLL LI LLD++++EA L + L +E+ V + P Sbjct: 719 IPPARKDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQ 778 Query: 358 AMKKGLQLELAPYAGEVR--IHANRRALAQILMHLVGNAIKFTDRGQVLVKLRQQRHDKT 415 A +KGL +G + +HA+++ L QIL++L+GNA+KFTD G V ++LR R Sbjct: 779 AEQKGLHFRFDK-SGRLPQIVHADQKRLRQILINLLGNAVKFTDHGGVTLRLRYARE--- 834 Query: 416 LTSWIEVSDSGCGISEQDQQKLFRAFTQLDATASRKHEGMGQGLYLSQKLANLMGGTITV 475 ++ +V D+G GI++ D++++F F + A R+ G G GL +S+ L ++MGG ++V Sbjct: 835 -IAYFDVIDTGIGIADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELSV 893 Query: 476 QSRVGTGSRFTL 487 QS+VG GS F L Sbjct: 894 QSQVGQGSSFHL 905 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 142 bits (359), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 92/259 (35%), Positives = 143/259 (55%), Gaps = 13/259 (5%) Query: 245 KRIEEDLAEKNRALQEA---VESRDRFLANTSHELRTPLNAILGFTEILLTRMGGPLTAD 301 +R EED R +EA E++ FLA SHE+RTP+N ILG +E+L M L++ Sbjct: 325 RRREEDALLATRLKEEADHANEAKSHFLAMVSHEIRTPMNGILGLSELL---MESGLSSK 381 Query: 302 QEQQLQTVHESAQHLLGLITSLLDVSRMEAEAEDLIPEALLCSELIEEAVAVLRPAAMKK 361 Q ++H + L+ +I +LD S++E+ DL A L++E + RP+ +K Sbjct: 382 QRDYADSIHGATGGLVRIINDILDFSKIESGKLDLEMVAFHPVRLVQELSDLYRPSLQRK 441 Query: 362 GLQLELAPYAGE-VRIHANRRALAQILMHLVGNAIKFTDRGQVLVKLRQQRHDKTLTSW- 419 +Q +L E + + + L Q+L +L+ NAIKFT G V + + ++ + + W Sbjct: 442 DVQFDLHLDCPENLSVVGDPARLKQVLGNLLSNAIKFTQAGHVQLSMSARQDESGPSRWR 501 Query: 420 --IEVSDSGCGISEQDQQKLFRAFTQLDATASRKHEGMGQGLYLSQKLANLMGGTITVQS 477 ++D+G GIS + Q+LFR F Q D++ SR+ G G GL +S+ L LMGGTI QS Sbjct: 502 LFFAITDTGIGISPEALQQLFRPFAQADSSISRRFGGTGLGLAISKNLVELMGGTIACQS 561 Query: 478 RVGTGSRFT---LCLEENT 493 G +RF+ LC E +T Sbjct: 562 IPGESTRFSFEILCPEAST 580 >gi|300313022|ref|YP_003777114.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 556 Score = 132 bits (331), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 136/242 (56%), Gaps = 11/242 (4%) Query: 251 LAEKNRALQEAVESRDRFLANTSHELRTPLNAILGFTEILLTRMG-GPLTADQEQQLQTV 309 L R +A +++ RFL+N SHE RTPLN +LG+++ L +G PL Q + Sbjct: 317 LVRSRREALQANQAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLA----QYAVAI 372 Query: 310 HESAQHLLGLITSLLDVSRMEAEAEDLIPEALLCSELIEEAVAVLRPAAMKKGLQLE--L 367 H+S LL L+ ++L+V+ +E + + EL+ +A+A P A KGL LE + Sbjct: 373 HDSGNRLLDLVNAILEVTELEDRRVAVHLDPANIRELVGQAIARHYPQAQAKGLPLECRI 432 Query: 368 APYAGEVRIHANRRALAQILMHLVGNAIKFTDRGQVLVKLRQQRHDKTLTSWIEVSDSGC 427 ++ + + R + ++L +L+ NA+++TD G+V+V++ ++ + LT + + D+G Sbjct: 433 GEDVPQILV-CDERKIQRVLDNLISNAVRYTDHGRVMVEV-ERSGPQQLT--MRIKDTGI 488 Query: 428 GISEQDQQKLFRAFTQLDATASRKHEGMGQGLYLSQKLANLMGGTITVQSRVGTGSRFTL 487 GI+ Q +F FTQ D + R EG G GL ++Q+L LMGG + +QS GS F+ Sbjct: 489 GIAASQQNDIFEKFTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQHQGSTFSF 548 Query: 488 CL 489 L Sbjct: 549 TL 550 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 142/256 (55%), Gaps = 17/256 (6%) Query: 238 VRDISDRKRIEEDLAEKNRALQEAVESRDRFLANTSHELRTPLNAILGFTEILLTRMGGP 297 +R + + R E L + A A+ +R FL+ SHE+RTP+NA+LG +L + Sbjct: 60 LRLLRENARTAEKLVQAKEAADHAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRSTR--- 116 Query: 298 LTADQEQQLQTVHESAQHLLGLITSLLDVSRMEAEAEDLIPEALLCSELIEEAVAVLRPA 357 L Q + + + +SA LLG++ +LD S+++ D+ ++++E + L Sbjct: 117 LDTQQAEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLAKVVEASAEALSFK 176 Query: 358 AMKKGLQL------ELAPYAGEVRIHANRRALAQILMHLVGNAIKFTDRGQVLVKLR--Q 409 A +K ++L L P R+ + + QIL++L+GNA+KFT G+VL++++ Q Sbjct: 177 AREKRVRLLAHLDSRLPP-----RLVGDPGRIRQILLNLLGNALKFTHAGEVLLRVQALQ 231 Query: 410 QRHDKTLTSWIEVSDSGCGISEQDQQKLFRAFTQLDATASRKHEGMGQGLYLSQKLANLM 469 D + EV DSG G+ E ++LF F Q D++ +R++ G G GL + ++L LM Sbjct: 232 VTSDHCRVRF-EVRDSGIGMDEDTLRRLFSPFAQADSSVTRQYGGTGLGLSICKRLVELM 290 Query: 470 GGTITVQSRVGTGSRF 485 GG+I V+S +GTGS F Sbjct: 291 GGSIGVESALGTGSCF 306 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,455,146 Number of extensions: 58986 Number of successful extensions: 367 Number of sequences better than 1.0e-08: 35 Number of HSP's gapped: 326 Number of HSP's successfully gapped: 35 Length of query: 493 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 404 Effective length of database: 1,198,455 Effective search space: 484175820 Effective search space used: 484175820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)