BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0102.p
         (182 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310564|ref|YP_003774656.1| regulator of the two-component ...   215   2e-57
gi|300311595|ref|YP_003775687.1| two component response regulato...    93   1e-20

>gi|300310564|ref|YP_003774656.1| regulator of the two-component
           system protein [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  215 bits (548), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/177 (64%), Positives = 133/177 (75%), Gaps = 2/177 (1%)

Query: 1   MFTTGLLANIGKLTLASAHPAGYSSLLTRPLEPSGQLAMEQSLFGFNHLNIAAALMQDWK 60
           MFTTGLLANIGKLTLASA P GYS+LLTR L+   + AMEQSLFGFNHLNIAAALMQDWK
Sbjct: 140 MFTTGLLANIGKLTLASAQPTGYSALLTRALDAPARRAMEQSLFGFNHLNIAAALMQDWK 199

Query: 61  IPELFCDAVLHYEAPALPEELPAPRPLEIIWTLYLSAAMAELGCGTPQVAEAALPKIARA 120
           IP+LFCDAVLHYE P +  E+ A R  EI+WTL+L+ AMAELGCG  Q A+AAL +   A
Sbjct: 200 IPDLFCDAVLHYETPVVIGEIAATRQDEIVWTLHLAQAMAELGCGPAQQAQAALARAGTA 259

Query: 121 LPQLQLAPNDFPALYQAAGEDWQDWTQTMHLTAKTLWQGLPGQVHDKLLRLQEAVGG 177
           L QLQLAP+D   LYQ AG+DWQ+WTQTM +   + WQ L  +  + L   Q A GG
Sbjct: 260 LAQLQLAPHDLLVLYQQAGQDWQEWTQTMRIAGTSPWQALDARSLETL--RQRAQGG 314


>gi|300311595|ref|YP_003775687.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score = 93.2 bits (230), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 78/156 (50%)

Query: 1   MFTTGLLANIGKLTLASAHPAGYSSLLTRPLEPSGQLAMEQSLFGFNHLNIAAALMQDWK 60
           MFT GLLA IG+L LASA P  Y  LL    + +     E+  FGF+HL +AAA+MQDW 
Sbjct: 140 MFTIGLLAGIGQLGLASARPKRYGELLLAGAKDAQLRVQERESFGFDHLALAAAMMQDWH 199

Query: 61  IPELFCDAVLHYEAPALPEELPAPRPLEIIWTLYLSAAMAELGCGTPQVAEAALPKIARA 120
            P +FC+AVLH+  PA        R  ++   L L+  +A++   +     A LP++ + 
Sbjct: 200 FPRIFCEAVLHHRDPAASGLEEDDRQQKVTRLLELAGCVADVCTASDAQRAALLPRLLQL 259

Query: 121 LPQLQLAPNDFPALYQAAGEDWQDWTQTMHLTAKTL 156
                L  +    +      DW DW   + +  + L
Sbjct: 260 GQHFALPVSSLEYVCGRVSWDWSDWGALLKVPTRVL 295


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 572,426
Number of extensions: 21421
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 2
Length of query: 182
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,241,070
Effective search space: 126589140
Effective search space used: 126589140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)