BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0101.p
         (108 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310564|ref|YP_003774656.1| regulator of the two-component ...   164   1e-42
gi|300311595|ref|YP_003775687.1| two component response regulato...    87   4e-19

>gi|300310564|ref|YP_003774656.1| regulator of the two-component
          system protein [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  164 bits (416), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/87 (94%), Positives = 85/87 (97%)

Query: 2  MLTFIEPTLFEKLRSAQALPSPGGVRLTIMRLCAQDDPDMHELIHLVQADPALSGRIIRI 61
          MLTFIEPTLF+KLRSAQALPSPGGVRLTIMRLCAQD+PDM ELIHLVQADPALSGRIIRI
Sbjct: 1  MLTFIEPTLFDKLRSAQALPSPGGVRLTIMRLCAQDNPDMAELIHLVQADPALSGRIIRI 60

Query: 62 VNVLNADRVRPIASVSMDSMLLVGLQA 88
          VNVLNA RVRPIASVSMDS+LLVGLQA
Sbjct: 61 VNVLNAQRVRPIASVSMDSLLLVGLQA 87


>gi|300311595|ref|YP_003775687.1| two component response regulator
          protein [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score = 86.7 bits (213), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 64/87 (73%)

Query: 2  MLTFIEPTLFEKLRSAQALPSPGGVRLTIMRLCAQDDPDMHELIHLVQADPALSGRIIRI 61
          M T+++P  F +++ ++ LP+P GVRL IM++C Q+D  + EL+  VQ DP L+GR+I+I
Sbjct: 1  MSTYVDPQTFREMQDSEVLPAPSGVRLKIMQMCQQEDIALPELVAQVQGDPVLAGRLIQI 60

Query: 62 VNVLNADRVRPIASVSMDSMLLVGLQA 88
           N+ N ++ R +ASV+++ +L+VGL A
Sbjct: 61 ANIPNINKGRMVASVNVELLLMVGLHA 87


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.135    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 326,091
Number of extensions: 10936
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 2
Length of query: 108
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 36
Effective length of database: 1,278,950
Effective search space: 46042200
Effective search space used: 46042200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 124 (52.4 bits)