BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0099.p (699 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 971 0.0 gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 207 2e-54 gi|300313029|ref|YP_003777121.1| two component hybrid sensor his... 186 4e-48 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 179 8e-46 gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 155 1e-38 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 971 bits (2509), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/680 (73%), Positives = 564/680 (82%), Gaps = 7/680 (1%) Query: 12 LPPWLILGLLAVWLVRALILLRLLRDHQRAARNLVLAKEAADQAMLTRGAFLSTMSHEIR 71 LP W L L A+W + AL LLRLLR++ R A LV AKEAAD AMLTRGAFLSTMSHEIR Sbjct: 40 LPAWQKLVLAAIWGIHALTLLRLLRENARTAEKLVQAKEAADHAMLTRGAFLSTMSHEIR 99 Query: 72 TPMNAVLGMAGLLRTTRLDTQQAEFAKAIEDSANALLGIVNDVLDFSKIDVGKMDIAVVE 131 TPMNAVLGMAGLLR+TRLDTQQAEFAKAIEDSA+ALLGIVNDVLDFSKIDVGKMDIAVVE Sbjct: 100 TPMNAVLGMAGLLRSTRLDTQQAEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVE 159 Query: 132 FDLLEVVEASAEALSFKAHEKRVRLLAHVDPRLPVRLLGDPGRIRQVLLNLLGNALKFTH 191 FDL +VVEASAEALSFKA EKRVRLLAH+D RLP RL+GDPGRIRQ+LLNLLGNALKFTH Sbjct: 160 FDLAKVVEASAEALSFKAREKRVRLLAHLDSRLPPRLVGDPGRIRQILLNLLGNALKFTH 219 Query: 192 VGEVLLRVQALHVSGDHCRVRFEVRDSGIGMDDDTLRRLFSPFSQADNSVTRQYGGTGLG 251 GEVLLRVQAL V+ DHCRVRFEVRDSGIGMD+DTLRRLFSPF+QAD+SVTRQYGGTGLG Sbjct: 220 AGEVLLRVQALQVTSDHCRVRFEVRDSGIGMDEDTLRRLFSPFAQADSSVTRQYGGTGLG 279 Query: 252 LSICKRLVELMGGKIGVESTPGNGSCFWFELGIPVAQPPQF--ATRPHAAKKRQVALLET 309 LSICKRLVELMGG IGVES G GSCFWFELGIPV P + P A + R++AL+E Sbjct: 280 LSICKRLVELMGGSIGVESALGTGSCFWFELGIPVTTGPGMIRSEPPAADRPRRIALVEP 339 Query: 310 HDASAAMLHEYLRGAGLETVRYSSASDALAALTGPAATATGIDTLIVSSEIRDVPPAAVL 369 HDASAAMLHEYLR A LET+R+ SASDALAALTGP A+A+GID +IVS++++D+ +V+ Sbjct: 340 HDASAAMLHEYLRSAALETLRFGSASDALAALTGPGASASGIDAVIVSTQVQDLDAVSVM 399 Query: 370 ARLHAERPTVTCVLLDHGVHGLNIDGKSTSPALQLPLRKQQLLRAVDPLAGGKDAADGEL 429 ARL AERP + VLLDHGVHGL+ K LQLPLRKQQLLRA L AA+ + Sbjct: 400 ARLQAERPALRRVLLDHGVHGLDTGSKPHHEVLQLPLRKQQLLRA---LGVTDSAAEAQT 456 Query: 430 TAARPLRALSHP--GQQEQRELLLVEDNVMNQKVAVYQLNAMGYAVDIASNGAEALEKLA 487 + + A + P G QR++LLVEDNVMNQKVAVYQLNAMGYA DIA+NG EALE+LA Sbjct: 457 SPHARMAAPATPRQGHSGQRDILLVEDNVMNQKVAVYQLNAMGYAADIAANGLEALERLA 516 Query: 488 RRAYALILMDCQMPVLDGYETTRRIRRLQGELAHTPIVAMTANAMAGDREQCLEAGMDDY 547 R YAL+LMDCQMP+LDGYETTRRIRR+QGELAHT IVAMTANAMAGDRE+CLEAGMDDY Sbjct: 517 RHRYALVLMDCQMPLLDGYETTRRIRRMQGELAHTTIVAMTANAMAGDRERCLEAGMDDY 576 Query: 548 LTKPLLRSQLAAMLEHYLPAAQEAAADTGAAPVMLDESRLQELFGEDTALAGQMLDMFVE 607 LTKPLLRSQL+AML HYLP + +A AAP ++DE RLQELFG+D ALA +ML MFVE Sbjct: 577 LTKPLLRSQLSAMLAHYLPPSAASAGSAPAAPQLIDEDRLQELFGQDRALAHEMLAMFVE 636 Query: 608 HTTPVMDDLARHCQASDPLLGEIQALGHRLAGSCLNLGIQALGQAGRNMELAARQGELAH 667 HT+P+M +L HCQ +P L E+QALGHRLAGSC+NLG+ ALGQ GR ME+AARQG+LA Sbjct: 637 HTSPLMQELQAHCQDQEPALDEVQALGHRLAGSCMNLGLDALGQLGREMEMAARQGDLAQ 696 Query: 668 VRKLAEECASAFAALRQHLK 687 R A+ CA+ FA L QHL+ Sbjct: 697 TRTRAQACAATFAQLCQHLQ 716 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 207 bits (528), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 114/287 (39%), Positives = 174/287 (60%), Gaps = 4/287 (1%) Query: 8 WRADLPPWLILGLLA-VWLVRALIL-LRLLRDHQRAARNLVLAKEAADQAMLTRGAFLST 65 W + P +++ ++ V L+ +L R +R + A KE AD A + FL+ Sbjct: 295 WMESMYPLMLVAAISLVGLIGGFVLTWRQVRRREEDALLATRLKEEADHANEAKSHFLAM 354 Query: 66 MSHEIRTPMNAVLGMAGLLRTTRLDTQQAEFAKAIEDSANALLGIVNDVLDFSKIDVGKM 125 +SHEIRTPMN +LG++ LL + L ++Q ++A +I + L+ I+ND+LDFSKI+ GK+ Sbjct: 355 VSHEIRTPMNGILGLSELLMESGLSSKQRDYADSIHGATGGLVRIINDILDFSKIESGKL 414 Query: 126 DIAVVEFDLLEVVEASAEALSFKAHEKRVRLLAHVDPRLPVRLLGDPGRIRQVLLNLLGN 185 D+ +V F + +V+ ++ K V+ H+D + ++GDP R++QVL NLL N Sbjct: 415 DLEMVAFHPVRLVQELSDLYRPSLQRKDVQFDLHLDCPENLSVVGDPARLKQVLGNLLSN 474 Query: 186 ALKFTHVGEVLLRVQALHVSGDHCRVR--FEVRDSGIGMDDDTLRRLFSPFSQADNSVTR 243 A+KFT G V L + A R R F + D+GIG+ + L++LF PF+QAD+S++R Sbjct: 475 AIKFTQAGHVQLSMSARQDESGPSRWRLFFAITDTGIGISPEALQQLFRPFAQADSSISR 534 Query: 244 QYGGTGLGLSICKRLVELMGGKIGVESTPGNGSCFWFELGIPVAQPP 290 ++GGTGLGL+I K LVELMGG I +S PG + F FE+ P A P Sbjct: 535 RFGGTGLGLAISKNLVELMGGTIACQSIPGESTRFSFEILCPEASTP 581 Score = 99.4 bits (246), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 75/119 (63%), Gaps = 2/119 (1%) Query: 449 LLLVEDNVMNQKVAVYQLNAMGYAVDIASNGAEALEKLARRAYALILMDCQMPVLDGYET 508 +L+ ED +N+++ L G + NG +A+E + Y L+LMDC MP++DGY+ Sbjct: 644 ILMAEDTEINRQLLRILLARKGCILQEVENGLQAVEAIRTGHYDLVLMDCMMPIMDGYQA 703 Query: 509 TRRIRRLQGE--LAHTPIVAMTANAMAGDREQCLEAGMDDYLTKPLLRSQLAAMLEHYL 565 T IR + L TPI+A+TA+A+ GDR++CL+AGMDDYL+KP + L +E +L Sbjct: 704 TAEIRAHEAARGLPRTPIIALTASAIEGDRQRCLDAGMDDYLSKPFTQVGLMQTVEKWL 762 >gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1524 Score = 186 bits (473), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 113/244 (46%), Positives = 156/244 (63%), Gaps = 1/244 (0%) Query: 44 NLVLAKEAADQAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRTTRLDTQQAEFAKAIEDS 103 NLV A+ A+QA + FL+++SHEIRTPMN VLGM LL+ T+ Q ++ E S Sbjct: 882 NLVDARLKAEQANSAKSLFLASVSHEIRTPMNGVLGMIQLLQRTQPLPAQQDYLDKAEIS 941 Query: 104 ANALLGIVNDVLDFSKIDVGKMDIAVVEFDLLEVVEASAEALSFKAHEKRVRLLAHVDPR 163 A +LL ++ND+LDFSK+D ++ + + F+L A L+ + V L +DP+ Sbjct: 942 AKSLLNLLNDLLDFSKMDAKQLQLDLQAFELERFGHNLAAVLAGSPPQAGVSLHIALDPQ 1001 Query: 164 LPVRLLGDPGRIRQVLLNLLGNALKFTHVGEVLLRVQALH-VSGDHCRVRFEVRDSGIGM 222 LP RL+GD R++QVL+NL GNALKFTH G + + L + G +R EV D+GIG+ Sbjct: 1002 LPRRLVGDAHRLQQVLVNLTGNALKFTHQGHIDVHFTRLDPLPGRTVALRVEVSDTGIGI 1061 Query: 223 DDDTLRRLFSPFSQADNSVTRQYGGTGLGLSICKRLVELMGGKIGVESTPGNGSCFWFEL 282 D L +F F+QA+ S TR+YGGTGLGL+I K LV LMGG++ V S PG GS FWF+L Sbjct: 1062 AADRLDDIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQVSSEPGRGSRFWFDL 1121 Query: 283 GIPV 286 + V Sbjct: 1122 QLAV 1125 Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/146 (42%), Positives = 83/146 (56%), Gaps = 10/146 (6%) Query: 448 ELLLVEDNVMNQKVAVYQLNAMGYAVDIASNGAE--ALEKLARRAYALILMDCQMPVLDG 505 ++LLVEDN +N++VA L G V A +G+ A+ R + L+LMD QMP +DG Sbjct: 1173 QILLVEDNPVNRQVASELLALSGAQVTCADSGSMGVAMACDPARHFDLVLMDLQMPGMDG 1232 Query: 506 YETTRRIRRLQGELAHTPIVAMTANAMAGDREQCLEAGMDDYLTKPL----LRSQLAAML 561 E TRRIR Q EL PI+AMTANA D+++C+EAGM ++ KP+ L L A L Sbjct: 1233 IEATRRIRG-QYELRGLPILAMTANASPEDKQRCIEAGMAGHIAKPIDIATLIPVLLAHL 1291 Query: 562 EHYLPAAQEAAADTGAAPVMLDESRL 587 H P + A A P L + RL Sbjct: 1292 HHERPVPEAAPQ---AVPQDLADDRL 1314 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 179 bits (454), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 106/269 (39%), Positives = 155/269 (57%), Gaps = 16/269 (5%) Query: 31 LLRLLRDHQRAARNLVLAKEAAD--QAMLTRGAFLSTMSHEIRTPMNAVLGMAGLL---R 85 LL L +D A +VL ++A + +A + FL+ MSHE+RTP+N+ L +A LL + Sbjct: 446 LLELQKDD-LAKTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKLLADNK 504 Query: 86 TTRLDTQQAEFAKAIEDSANALLGIVNDVLDFSKIDVGKMDIAVVEFDLLEVVEASAEAL 145 L +Q FA+ I + N LL ++ND+LD SK++ GK+DI F L ++ + + + Sbjct: 505 QGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKLADELSASF 564 Query: 146 SFKAHEKRVRLLAHVDPRLPVRLLGDPGRIRQVLLNLLGNALKFTHVGEVLLRVQALHVS 205 + A +K + V+P +P R+ D R+ Q+L NLL NA+KFT GEV LR+ Sbjct: 565 AITAQQKGLGFKVEVEPGVPQRMETDIQRLGQILKNLLSNAIKFTEKGEVSLRI----YP 620 Query: 206 GDHCRVRFEVRDSGIGMDDDTLRRLFSPFSQADNSVTRQYGGTGLGLSICKRLVELMGGK 265 R+ F VRD+GIG+ +D + +F F QAD S R+YGGTGLGLSI + L L+GG Sbjct: 621 DAGGRIAFAVRDTGIGIGEDQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGD 680 Query: 266 IGVESTPGNGSCFWFELGIPVAQPPQFAT 294 I V S G GS F L PP +++ Sbjct: 681 IRVTSRLGEGSIFTLSL------PPLYSS 703 Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/128 (40%), Positives = 72/128 (56%), Gaps = 7/128 (5%) Query: 445 EQRELLLVEDNVMNQKVAVYQLNAMGYAVDIASNGAEALEKLARRA------YALILMDC 498 E R +L+VED+V N L G V+IA NG EAL+ L R L+LMD Sbjct: 1033 EGRRILVVEDDVRNIFALSSVLEPKGMKVEIARNGREALQALQRSQDKPDAPIDLVLMDI 1092 Query: 499 QMPVLDGYETTRRIRRLQGELAHTPIVAMTANAMAGDREQCLEAGMDDYLTKPLLRSQLA 558 MP +DG R IR+ Q PI+A+TA AM D+E+CL AG +DY+ KPL +L Sbjct: 1093 MMPEMDGLTAMREIRK-QAVWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLL 1151 Query: 559 AMLEHYLP 566 +++ ++P Sbjct: 1152 SLVRVWMP 1159 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 155 bits (391), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 163/294 (55%), Gaps = 25/294 (8%) Query: 16 LILGLLAVWLV-----RAL----------ILLRLLRDHQRAARNLVLAKEAADQAMLTRG 60 +++G+ A WLV RA+ +LL+ + H++ L AKEAA+ A L + Sbjct: 630 VVVGVGAWWLVLTNESRAVAQEESERQTNLLLQEIEAHKQTDAELQRAKEAAESANLAKS 689 Query: 61 AFLSTMSHEIRTPMNAVLGMAGLLRT-TRLDTQQAEFAKAIEDSANALLGIVNDVLDFSK 119 F++ MSHE+RTP+N++LG A +L + + + I S LL +++ +LD +K Sbjct: 690 RFVAGMSHELRTPLNSILGYAQILHVDATIPPARKDAIGVIRRSGEHLLSLIDGLLDIAK 749 Query: 120 IDVGKMDIAVVEFDLLEVVEASAEALSFKAHEKRVRLLAHVDPRLPVRLLGDPGRIRQVL 179 I+ GKM +A E L +E + +A +K + RLP + D R+RQ+L Sbjct: 750 IEAGKMRLASDELALEAFLEQIVGMFAPQAEQKGLHFRFDKSGRLPQIVHADQKRLRQIL 809 Query: 180 LNLLGNALKFTHVGEVLLRVQALHVSGDHCR--VRFEVRDSGIGMDDDTLRRLFSPFSQA 237 +NLLGNA+KFT G V LR++ + R F+V D+GIG+ DD R+F PF ++ Sbjct: 810 INLLGNAVKFTDHGGVTLRLR-------YAREIAYFDVIDTGIGIADDDRERIFLPFERS 862 Query: 238 DNSVTRQYGGTGLGLSICKRLVELMGGKIGVESTPGNGSCFWFELGIPVAQPPQ 291 + R+ GTGLGL+I + LV +MGG++ V+S G GS F ++ +P P+ Sbjct: 863 SAANLREDIGTGLGLAISRMLVHIMGGELSVQSQVGQGSSFHLKIYLPEVHVPR 916 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,027,780 Number of extensions: 81434 Number of successful extensions: 596 Number of sequences better than 1.0e-08: 63 Number of HSP's gapped: 522 Number of HSP's successfully gapped: 67 Length of query: 699 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 607 Effective length of database: 1,184,250 Effective search space: 718839750 Effective search space used: 718839750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)