BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0096.p
         (414 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310567|ref|YP_003774659.1| chromate efflux protein [Herbas...   489   e-139
gi|300312749|ref|YP_003776841.1| chromate transport protein [Her...    65   1e-11

>gi|300310567|ref|YP_003774659.1| chromate efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 482

 Score =  489 bits (1258), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 312/415 (75%), Positives = 339/415 (81%), Gaps = 4/415 (0%)

Query: 1   MPASPAPEPATPTALPAAPRQP--AWAIFLVFLRLGLTSFGGPAAHLGYFRHEFVARRRW 58
           MPA P P   T    P A   P   W +FLVFLRLGLTSFGGPAAHLGYFR EFVARR W
Sbjct: 70  MPAQP-PHSVTANQ-PRASGSPGACWEVFLVFLRLGLTSFGGPAAHLGYFRTEFVARRGW 127

Query: 59  LSEQTYADLVAMCQFLPGPSSSQVGLAIGLIRGGYRGALAAWLGFTLPSALLLMVVALSV 118
           LSE  YADLVAMCQFLPGPSSSQVG+AIG++R GY GALAAWLGFTLPSALLLM +ALSV
Sbjct: 128 LSEAAYADLVAMCQFLPGPSSSQVGMAIGVLRAGYGGALAAWLGFTLPSALLLMGLALSV 187

Query: 119 LEDAHWLSGEVVHGLKIVAVAIVAQAVWGMAQTLCRGPVRLAIMVLAALAAWQLQGSLVQ 178
           L+ AHWLS EVVHGLKIVAVAIVAQAVWGMA +LCRG  R  I + AALAA  + G+L Q
Sbjct: 188 LQQAHWLSAEVVHGLKIVAVAIVAQAVWGMAGSLCRGLQRQVITLAAALAALLMSGALAQ 247

Query: 179 LGVIVAAGLAGRLLLHGPQVALQEHLPLVVSRRTGRACLLLFFVLLAGIPLLAALHPAAW 238
           L +IV A LAG LLL     A  + LP  ++RR G ACLLLF  LL GIP LAA HPA+W
Sbjct: 248 LAIIVTAALAGWLLLKSVPTARLDDLPPTLNRRVGAACLLLFLGLLLGIPALAAWHPASW 307

Query: 239 LQQINIFYRVGSLVFGGGHVVLPLLQAELVPTGWVNKDVFLAGYGAAQAIPGPLFTLAAY 298
           LQ  +IFYRVGSLVFGGGHVVLPLLQAELVP GW++KDVFLAGYGAAQA+PGPLFTLAAY
Sbjct: 308 LQLTSIFYRVGSLVFGGGHVVLPLLQAELVPAGWLDKDVFLAGYGAAQAVPGPLFTLAAY 367

Query: 299 LGVVMSSWPNGVAGGVLCLLAIFAPSFLLVTGLLPFWDTVRRQAAMQAVLAGVNAAVVGL 358
           LGVVMSSWPNGVAGG+LCL+AIF PSFLLV GLLPFWD+VRR   MQA LAGVNAAVVGL
Sbjct: 368 LGVVMSSWPNGVAGGLLCLVAIFTPSFLLVIGLLPFWDSVRRNGPMQAALAGVNAAVVGL 427

Query: 359 LLAALYQPVWTSAIFGWHDLVIALAAFAALVWLKLPSWAVVLLAVLAATLPALAG 413
           LLAALYQPVWTSAI    DL++ALAA AALV+L++PSWAVVLL VLA  LP LAG
Sbjct: 428 LLAALYQPVWTSAIHSLRDLLVALAALAALVYLRMPSWAVVLLVVLAVLLPGLAG 482


>gi|300312749|ref|YP_003776841.1| chromate transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 9/108 (8%)

Query: 10  ATPTAL-PAAPRQPAWAIFLVFLRLGLTSFGG--PAAHLGYFRHEFVARRRWLSEQTYAD 66
           +TP  L P  P      +FL FL LG+T+FGG  P AH        V RR+WL++  + +
Sbjct: 15  STPDLLAPERPVPTTRELFLGFLGLGMTAFGGALPLAH-----RMIVERRKWLTDPEFVE 69

Query: 67  LVAMCQFLPGPSSSQVGLAIGLIRGGYRGALAAWLGF-TLPSALLLMV 113
           L+ +CQFLPG +   + +A+G+   G++GALA   G   +PS +++++
Sbjct: 70  LLGLCQFLPGGNIINLSVALGMKFRGWKGALAGVTGLIAVPSMVVILL 117


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 990,897
Number of extensions: 36741
Number of successful extensions: 231
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 3
Length of query: 414
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,203,190
Effective search space: 392239940
Effective search space used: 392239940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)