BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0088.p
         (749 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310574|ref|YP_003774666.1| catalase [Herbaspirillum serope...  1400   0.0  

>gi|300310574|ref|YP_003774666.1| catalase [Herbaspirillum
           seropedicae SmR1]
          Length = 748

 Score = 1400 bits (3625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 695/748 (92%), Positives = 720/748 (96%)

Query: 1   MSNEAKCPFNHTAGSGTSNRDWWPKQLRVDLLAQHSSKSNPMGEDFNYAEAFKSLDLAAV 60
           MSNEAKCPFNHTAGSGTSNRDWWPKQLRVDLLAQHSSKSNPMGEDF+YAEAFKSLDLAAV
Sbjct: 1   MSNEAKCPFNHTAGSGTSNRDWWPKQLRVDLLAQHSSKSNPMGEDFDYAEAFKSLDLAAV 60

Query: 61  KADLAKVMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGRGQQRFAPLNSWP 120
           KADLAKVMTDSQDWWPADFGHYGPLF+RMAWHSAGTYRIGDGRGGAGRGQQRFAPLNSWP
Sbjct: 61  KADLAKVMTDSQDWWPADFGHYGPLFVRMAWHSAGTYRIGDGRGGAGRGQQRFAPLNSWP 120

Query: 121 DNVNLDKARRLIWPVKQKYGNKISWADLLILTGNVALETMGFKTFGFAGGRQDVWEPDLD 180
           DNVNLDKARRL+WPVKQKYGNKISWADLLILTGNVALETMGFKTFGFAGGR DVWEPDLD
Sbjct: 121 DNVNLDKARRLLWPVKQKYGNKISWADLLILTGNVALETMGFKTFGFAGGRADVWEPDLD 180

Query: 181 VYWGTESTWLGGDDRYGKGKAGASHGEITADADRHGNEQSRTGPAGRNLENPLAAVQMGL 240
           VYWGTESTWLGGDDRYGKGK  +S GEI ADA RHG EQ+RT PAGRNLENPLAAVQMGL
Sbjct: 181 VYWGTESTWLGGDDRYGKGKGSSSQGEIPADAHRHGQEQARTAPAGRNLENPLAAVQMGL 240

Query: 241 IYVNPEGPEGNPDPVAAAHDIRETFARMAMDDEETVALIAGGHTFGKTHGAGDAKHVGRE 300
           IYVNPEGPEGNPDP+AAAHDIRETFARMAMDDEETVALIAGGHTFGKTHGAGDAKHVGRE
Sbjct: 241 IYVNPEGPEGNPDPLAAAHDIRETFARMAMDDEETVALIAGGHTFGKTHGAGDAKHVGRE 300

Query: 301 PEGEGLEHQGMGWKSSFGSGVGGDTISSGLEVTWTQTPAQWSNYFFENLFNYEWELTKSP 360
           PEGE ++ QG+GWKSSFGSGVGGDTISSGLEVTWTQTPAQWSNYFFENLF YEWELTKSP
Sbjct: 301 PEGEDMDSQGLGWKSSFGSGVGGDTISSGLEVTWTQTPAQWSNYFFENLFKYEWELTKSP 360

Query: 361 AGAHQWVAKGADAVIPHAHGGAPLRPTMLTTDLSLRFDPAYEKISRRFLEHPEQFADAFA 420
           AGAHQWVAKGADAVIPHAHGGAPL PTMLTTDLSLRFDPAYEKISRRFLEHPEQFADAFA
Sbjct: 361 AGAHQWVAKGADAVIPHAHGGAPLLPTMLTTDLSLRFDPAYEKISRRFLEHPEQFADAFA 420

Query: 421 RAWFKLTHRDLGPRARYLGPEVPAEELIWQDPLPKAEGAPIDAADVTALKSKILASGLSV 480
           RAWFKLTHRDLGPR+RYLGPEVPAEELIWQDPLP+AEGA IDAADV ALK+K+L SGLSV
Sbjct: 421 RAWFKLTHRDLGPRSRYLGPEVPAEELIWQDPLPQAEGAQIDAADVAALKAKVLGSGLSV 480

Query: 481 SELVSTAWASASTFRGGDMRGGANGARVRLAPQKDWAANQPAQLAKVLKALEGIQSEFNQ 540
            ELV+TAWASASTFRGGDMRGGANGAR+RLAPQKDWAANQPAQLAKVLK LEGIQS FNQ
Sbjct: 481 PELVATAWASASTFRGGDMRGGANGARIRLAPQKDWAANQPAQLAKVLKTLEGIQSAFNQ 540

Query: 541 GAKKVSLADLIVLAGSAAVEKAAKDAGVAVTVPFSAGRVDASQEQTDVASFEPLEPVVDG 600
           G KKVSLADLIVLAGSAAVEKAA+DAGVAV VPF AGRVDASQEQTD ASF PLEP+VDG
Sbjct: 541 GGKKVSLADLIVLAGSAAVEKAAQDAGVAVAVPFRAGRVDASQEQTDAASFAPLEPIVDG 600

Query: 601 FRNFQKQRYAVRAEDMLIDKAQQLTLTAPEMTVLIGGLRVLGNTVGGSTKGVFTSKVGVL 660
           FRNFQKQRYAVR EDMLIDKAQQLTL+APEMTVL+GGLRVLGN VGGSTKG+FT +VGVL
Sbjct: 601 FRNFQKQRYAVRGEDMLIDKAQQLTLSAPEMTVLVGGLRVLGNNVGGSTKGMFTDRVGVL 660

Query: 661 SNDFFVNLLDMGTEWKSTSPAQEEFEGRDRKSGAVKWTGTRVDLVFGSNAVLRALAEVYA 720
           SNDFFVNLLDM TEWKSTSPAQEEFEGRDRK+GAVKW GTRVDLVFGSNAVLRALAEVYA
Sbjct: 661 SNDFFVNLLDMATEWKSTSPAQEEFEGRDRKTGAVKWAGTRVDLVFGSNAVLRALAEVYA 720

Query: 721 SSDAKEKFVKDFVAAWVKVMDLDRYDLK 748
           S+DAKEKFVKDFVAAWVKVM+LDR+DLK
Sbjct: 721 SADAKEKFVKDFVAAWVKVMELDRFDLK 748


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,572,269
Number of extensions: 117307
Number of successful extensions: 343
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 657
Effective length of database: 1,184,250
Effective search space: 778052250
Effective search space used: 778052250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)