BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0085.p
         (707 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310577|ref|YP_003774669.1| DNA/RNA non-specific endonuclea...  1074   0.0  

>gi|300310577|ref|YP_003774669.1| DNA/RNA non-specific endonuclease
           [Herbaspirillum seropedicae SmR1]
          Length = 707

 Score = 1074 bits (2777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/715 (78%), Positives = 603/715 (84%), Gaps = 16/715 (2%)

Query: 1   MDAQAVKDFRACVADTASERQRVRSLVACGQWREAEPDSERARAYALRQRNLGHPAGPES 60
           MD +A+KDFRACVADTAS+RQRVR LVACGQWR AEPDSERARAYALRQRNLG   GPES
Sbjct: 1   MDERALKDFRACVADTASQRQRVRELVACGQWRTAEPDSERARAYALRQRNLGARGGPES 60

Query: 61  IIGDSEDFLRASFLAQGAAVARAVAYVEVNSDQSSELATGFLISPRLFLTNQHVIADAAA 120
           IIGD+EDFLRASFLAQGAAVARAVAYVEV+S Q +E+ATGF++SPRLFLTNQHVIAD AA
Sbjct: 61  IIGDTEDFLRASFLAQGAAVARAVAYVEVSSGQVNEVATGFMVSPRLFLTNQHVIADLAA 120

Query: 121 ARGTRLTFLRELDARGVPRATTSYLLAPERLALFSPADQLDYALIALGERQSGTATVEEL 180
           ARGTR++FLRELD RGVPRA+TS+LLAP+RLALFS +DQLDYALIALGERQSGTAT + L
Sbjct: 121 ARGTRVSFLRELDERGVPRASTSFLLAPQRLALFSASDQLDYALIALGERQSGTATADML 180

Query: 181 SFCPLSDQPDKHVIGMAANIIQHPSGWMKMISIRNNTVTARTEHTLLYETDTQQGSSGSP 240
            FCPLSDQPDKHVIGM ANIIQHP GW+KMISIRNNTVTARTEHTLLYETDT+QGSSGSP
Sbjct: 181 GFCPLSDQPDKHVIGMNANIIQHPGGWLKMISIRNNTVTARTEHTLLYETDTEQGSSGSP 240

Query: 241 VFNDDWQLVALHHWGEPYRDAGTGDQPLRKVNEGIRISALYRDLLARLPTLPPEARALLQ 300
           VFNDDWQLVALHHWGEPYRDA +     RKVNEGIRISA+YRDLL RLPTLP  AR LLQ
Sbjct: 241 VFNDDWQLVALHHWGEPYRDAASAQDTPRKVNEGIRISAIYRDLLQRLPTLPEAARPLLQ 300

Query: 301 EALSYQVASAPGALTV-ADNTASDMTQEISM---NNSGKD----IALQTATLTIPLEVTV 352
           EALSYQ A+ P          ASD  +E SM   N+SG D    +  Q ATLTIPLE+TV
Sbjct: 301 EALSYQTAATPATAVAWPSAAASDTREETSMSTGNDSGADARTGVDAQAATLTIPLEITV 360

Query: 353 RVAGGAATVARTTTPDAGNAVLAPDNTSLQPPRRLSPPRPSAGAEALRIDPDYGNRSGYD 412
           RVAG  AT A +    +      P        RRLSPPRP+   EALRIDPDY  RSGYD
Sbjct: 361 RVAGATATAASSPAAPSTPVPAQPQ------ARRLSPPRPTHAQEALRIDPDYSKRSGYD 414

Query: 413 AAFIPGAELPLPQPDAKLAGDIVPLLPTVAGAAGNDGELKYEHFSIKLLKRRRMAAFTAT 472
            AFI G ++PLPQPD  LA  IVPLL     A   DGELKYEHFSIKLLK RR+AAFTAT
Sbjct: 415 PAFIAGVQVPLPQPDGTLAAQIVPLL--AEDAVHGDGELKYEHFSIKLLKPRRLAAFTAT 472

Query: 473 NIDGTHYLAVDRGSGQVNAAEGDAWFRDPRVAAGSVLEQDFYSAWSTYFDRGHLTRRSDP 532
           NIDG  YL VDRGSG+VN AEGDAWFRDPRV  G+VLEQDFY AWS YFDRGHLTRRSDP
Sbjct: 473 NIDGARYLEVDRGSGRVNGAEGDAWFRDPRVPVGAVLEQDFYGAWSNYFDRGHLTRRSDP 532

Query: 533 SWGTPEEAERANADTFHFTNCSPQHFRFNQSATYWQGLERYVLENGVLAASSKGRLCVFQ 592
           SWG+PEEAERANADTFHFTNCSPQHFRFNQSA YWQGLERYVLENGVLA+S+KGRLCVFQ
Sbjct: 533 SWGSPEEAERANADTFHFTNCSPQHFRFNQSAVYWQGLERYVLENGVLASSTKGRLCVFQ 592

Query: 593 GPVFNDQVDLWADEVQIPSAFFKIVVWKGKQGLKAVGLLADQSALLSESRHSLGTPRDLP 652
           GPVFNDQVDLWADEVQIPS+FFKIVVWKGKQGLKAV L+ADQSALLSESRHSLG P+ LP
Sbjct: 593 GPVFNDQVDLWADEVQIPSSFFKIVVWKGKQGLKAVALVADQSALLSESRHSLGAPQALP 652

Query: 653 SVDVNHWRVAIPELERMTGLDFGSRVRAADTIADGKQPQVGEARLRITAFEQIRL 707
           SV+VNHWRVA+PE+ERMTGLDFG  VR ADTIA G+QPQVGEAR RIT+F+QIRL
Sbjct: 653 SVEVNHWRVAVPEVERMTGLDFGKLVRQADTIAAGQQPQVGEARQRITSFDQIRL 707


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,196,567
Number of extensions: 94148
Number of successful extensions: 281
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 615
Effective length of database: 1,184,250
Effective search space: 728313750
Effective search space used: 728313750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)