BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0079.p (546 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310583|ref|YP_003774675.1| methyl-accepting chemotaxis I (... 784 0.0 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 290 2e-79 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 276 3e-75 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 253 3e-68 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 252 6e-68 >gi|300310583|ref|YP_003774675.1| methyl-accepting chemotaxis I (serine chemoreceptor) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 574 Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/586 (78%), Positives = 484/586 (82%), Gaps = 52/586 (8%) Query: 1 MIQHLKIGSRLAFGFCLILLLATAILLIGLWRMAELEASSEYVIDQKVAAMTSAMNMREA 60 MIQ LKIGSRLAFGFCLILLLATAILLIGLWRMAELEA+SEYVID+KVAAMT+A+NMREA Sbjct: 1 MIQRLKIGSRLAFGFCLILLLATAILLIGLWRMAELEAASEYVIDEKVAAMTAALNMREA 60 Query: 61 GSQLALALRKVVTPTDAAEGKAEDAHLGEILKAYAGFEKQITGLSADGRGKDLLAATSGE 120 GSQLALALRKVVTPTDAAEGKAEDAHL +IL+AYAGFEKQIT LS GRGK+LL A SG+ Sbjct: 61 GSQLALALRKVVTPTDAAEGKAEDAHLSKILQAYAGFEKQITELSPAGRGKELLTAASGQ 120 Query: 121 SKKLFPLVEQIRQQVASNNYFDAAQQLKSDFLPAHEKWMASVAALAAFQQEDMKQAHADA 180 SK+LFP+VE IRQQVASNNYFDAAQ LKSDFLPAH+KWMASV ALAAFQQEDMK AHA+A Sbjct: 121 SKQLFPIVETIRQQVASNNYFDAAQLLKSDFLPAHDKWMASVGALAAFQQEDMKAAHAEA 180 Query: 181 KDSYRKAQIGMLAMGVLTLGLGFFFTFVITRSIVNPLKRAGSIAETISRGDLTHDFHDQG 240 KDSYRKAQIGML MGVLTLGLGFFFTFVITRSIV PLKRAG+IAETISRGDLT DFHD G Sbjct: 181 KDSYRKAQIGMLLMGVLTLGLGFFFTFVITRSIVGPLKRAGNIAETISRGDLTQDFHDHG 240 Query: 241 RDEAAHLVNALDAMQGNLATTLNEVKESAAVIAVASHEIARGNVDLSNRTESQASSLEET 300 RDEAA +VNAL+AMQ NLA TLNEVKESAAVIAVASHEIARGNVDLSNRTESQASSLEET Sbjct: 241 RDEAATMVNALEAMQTNLAATLNEVKESAAVIAVASHEIARGNVDLSNRTESQASSLEET 300 Query: 301 ASSMEQLTSTVQQNAANAQQANQLVLSASDYATKGGRVVGDVVATMGSIKESSGKIVDII 360 ASSMEQLTSTVQQNA NA+QANQLV+SASDYATKGGRVVGDVVATMGSIKESS KIVDII Sbjct: 301 ASSMEQLTSTVQQNAENARQANQLVVSASDYATKGGRVVGDVVATMGSIKESSSKIVDII 360 Query: 361 GVXE---------------ERAAA-------------------------KEIKELISDSV 380 GV + E A A KEIK LISDSV Sbjct: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKGLISDSV 420 Query: 381 DKVDAGGKLVDEAGATMSEIVASVKHVADIMGEITAASQEQSAGIAEVNNAIAQIDEITQ 440 +KVDAGGKLVDEAGATMSEIV SVKHVADIMGEITAASQEQSAGIAEVN+AI QIDEITQ Sbjct: 421 EKVDAGGKLVDEAGATMSEIVTSVKHVADIMGEITAASQEQSAGIAEVNHAITQIDEITQ 480 Query: 441 QNAALVEQAAAAAESLQEQSDVLARAVAVFKLKTAAQARPQSQPQHPAHKQSAAPVMNSP 500 QNAALVEQAAAAAESLQEQ+DVLARAVAVF+LKTA Q + PV P Sbjct: 481 QNAALVEQAAAAAESLQEQADVLARAVAVFRLKTA---------QAQGSIPTPPPVPAPP 531 Query: 501 AAARTVNPPPAVAAARKPAVASLPPASGASKGKPATAARDDDFEEF 546 A RTVN P AV A R VASLP A+ +K KPA RDD+FEEF Sbjct: 532 APLRTVNTPAAVTATRP--VASLPAAA-PAKRKPAALTRDDEFEEF 574 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 290 bits (743), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 219/531 (41%), Positives = 294/531 (55%), Gaps = 70/531 (13%) Query: 2 IQHLKIGSRLAFGFCLILLLATAILLIGLWRMAELEASSEYVIDQKVAAMTS-AMNMREA 60 +++LKIG RLA GF +L+L ++ +G+WR+ + +++ MT A+ Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATD--------DMTRIALKKERD 52 Query: 61 GSQLALALRKVVTPTDAAEGKAEDAHLGEILKAYAGFEKQITGLSA--DGRGKDLLAA-T 117 Q A+++ T A +DA +AY F+KQI SA K++ AA T Sbjct: 53 AVQWHAAIKENGVRTFAVMKSDDDA-----FQAY--FQKQIDAQSARISQLQKEVEAAIT 105 Query: 118 SGESKKLFPLVEQIR--QQVASNNYFD---------AAQQLKSDFLPAHEKWMASVAALA 166 E K+LF V ++R + + FD A + + + + + V A Sbjct: 106 DAEEKRLFDEVGKLRAAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYA 165 Query: 167 AFQQEDMKQAHADAKDSYRKAQIGMLAMGVLTLGLGFFFTFVITRSIVNPLKRAGSIAET 226 FQ++ + Q A YR + +LA+G + + LG +++TRSI PL +A +IAET Sbjct: 166 DFQKQVIDQTAAAINRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAET 225 Query: 227 ISRGDLTHDFHDQGRDEAAHLVNALDAMQGNLATTLNEVKESAAVIAVASHEIARGNVDL 286 ++ GDLT RDE L+ AL M GNL + V+ I AS EIA GN+DL Sbjct: 226 VAAGDLTSRIDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDL 285 Query: 287 SNRTESQASSLEETASSMEQLTSTVQQNAANAQQANQLVLSASDYATKGGRVVGDVVATM 346 S RTE+QA SLEETAS+MEQLTSTV+QNA NA+QAN+L SAS AT+GG VV VVATM Sbjct: 286 SARTEAQAGSLEETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATM 345 Query: 347 GSIKESSGKIVDIIGVXE--------------------------------------ER-- 366 G+I SS KI DIIGV + +R Sbjct: 346 GAIHASSQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 405 Query: 367 AAAKEIKELISDSVDKVDAGGKLVDEAGATMSEIVASVKHVADIMGEITAASQEQSAGIA 426 +AAKEIK+LI DSV+KVD G +LV AG TM E+V SV V ++ EIT ASQEQS GI Sbjct: 406 SAAKEIKQLIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIE 465 Query: 427 EVNNAIAQIDEITQQNAALVEQAAAAAESLQEQSDVLARAVAVFKLKTAAQ 477 +VN AI IDE TQQNAALVEQAAAAA S+Q+Q+ L AV+VF+L+ AQ Sbjct: 466 QVNLAITHIDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRLEDDAQ 516 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 276 bits (706), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 214/522 (40%), Positives = 290/522 (55%), Gaps = 66/522 (12%) Query: 4 HLKIGSRLAFGFCLILLLATAILLIGLWRMAELE----ASSEYVIDQKVAAMTSAMNMRE 59 +L I +LA F +++ L LL GL+ + EL+ AS E ++ + + M +A ++ Sbjct: 6 NLNIAKKLALSFAVVIALT---LLQGLFAIKELKQVNKASGE-IVSKWMPTMDAARELQ- 60 Query: 60 AGSQLALALRKV-----VTPTD-AAEGKAEDAHLGEILKAYAGFEKQITGLSADGRGKDL 113 GS L L ++ VTP + AA KA L + + A FE++++ + + K+ Sbjct: 61 -GSLPPLRLNELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMS----EPQEKEQ 115 Query: 114 LAATSGESKKLFPLVEQIRQQVASNNYFDAAQQLKSDFLPAHEKWMASVAALAAFQQEDM 173 A + EQ+ + A+ Y + D + + ++ A+ Sbjct: 116 YAQFLKNLTAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGS 175 Query: 174 KQAHADAKDSYRKAQ---IGMLAMGVLTLGLGFFFTFVITRSIVNPLKRAGSIAETISRG 230 QA +A +R AQ +G+LA VL L F++ ++ PLK A IA+ ++RG Sbjct: 176 AQADEEASTVFRGAQRWIVGLLAATVLIASL---LAFLVATNVSRPLKEAVQIAQRVARG 232 Query: 231 DLTHDFHDQGRDEAAHLVNALDAMQGNLATTLNEVKESAAVIAVASHEIARGNVDLSNRT 290 DLT GRDE L+ AL AM +L ++EV++ I ASHEIARGN+DLSNRT Sbjct: 233 DLTLRIRPAGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRT 292 Query: 291 ESQASSLEETASSMEQLTSTVQQNAANAQQANQLVLSASDYATKGGRVVGDVVATMGSIK 350 E QA SLEETAS+ME+LTSTV QNA NA+QANQL +ASD A++GG VVG VV TM I Sbjct: 293 EQQAGSLEETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGIT 352 Query: 351 ESSGKIVDIIGV---------------------------------XEERA-------AAK 370 ESS +I DII V E R+ AAK Sbjct: 353 ESSRRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAK 412 Query: 371 EIKELISDSVDKVDAGGKLVDEAGATMSEIVASVKHVADIMGEITAASQEQSAGIAEVNN 430 EIKELI DSV KV AG LV+ AG+TM+E+VASV+ V D++ EI+AA+QEQS GI EVN Sbjct: 413 EIKELIDDSVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNL 472 Query: 431 AIAQIDEITQQNAALVEQAAAAAESLQEQSDVLARAVAVFKL 472 AI Q+DE TQQNAALVEQAAAAA+SL+ Q+ LA V FKL Sbjct: 473 AITQMDETTQQNAALVEQAAAAADSLKGQASNLAAVVGKFKL 514 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 253 bits (646), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 191/517 (36%), Positives = 293/517 (56%), Gaps = 48/517 (9%) Query: 2 IQHLKIGSRLAFGFCLILLLATAILLIGLWRMAELEASSEYVIDQKVAAMTSAMNMREAG 61 ++ +KI RLA F +++ + I +G+ ++ + SS +++ + + A+ +R+ Sbjct: 3 LKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRDNV 62 Query: 62 SQLALALRKVVTPTDAAEGKA----EDAHLGEILKAYAGFEKQITGLSADGRGKDLLAAT 117 + A LR + + E A+ + +A EK + + RG++L + Sbjct: 63 NGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEK----ILSTARGRELFQSI 118 Query: 118 SGESKKLFPLVEQIRQQVASNNYFDAAQQLKSDFLPAHEKWMASVAALAAFQQEDMKQAH 177 +++R+ + +A + L + +PA +K+ + AFQ+ M+Q+ Sbjct: 119 QEARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSV 178 Query: 178 ADAKDSYRKAQIGMLAMGVLTLGLGFFFTFVITRSIVNPLKRAGSIAETISRGDLTHDFH 237 + +D+ + A ML + + + L +++TRSI PL A S+A ++ GDLT Sbjct: 179 TEGRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIG 238 Query: 238 DQGRDEAAHLVNALDAMQGNLATTLNEVKESAAVIAVASHEIARGNVDLSNRTESQASSL 297 +DE L+ AL +M +L ++EV++ + I AS EIA GN+DLS+RTE QA +L Sbjct: 239 ATSKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGAL 298 Query: 298 EETASSMEQLTSTVQQNAANAQQANQLVLSASDYATKGGRVVGDVVATMGSIKESSGKIV 357 EETAS+ME+LTSTV+QNA NA+QAN L +AS+ A +GG VVG VV TMG I ++S KIV Sbjct: 299 EETASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIV 358 Query: 358 DIIGV---------------------------------XEER-------AAAKEIKELIS 377 DII V E R +AAKEIK LI Sbjct: 359 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALID 418 Query: 378 DSVDKVDAGGKLVDEAGATMSEIVASVKHVADIMGEITAASQEQSAGIAEVNNAIAQIDE 437 DSV +VD G +LV++AG TM+E+VASV+ V D++ EI+AAS EQS GI ++N+AI Q+D+ Sbjct: 419 DSVSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQ 478 Query: 438 ITQQNAALVEQAAAAAESLQEQSDVLARAVAVFKLKT 474 +TQQNAALVE+AAAAA+SLQEQS L+ V+VFKL + Sbjct: 479 VTQQNAALVEEAAAAAQSLQEQSTRLSATVSVFKLSS 515 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 252 bits (643), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 209/548 (38%), Positives = 300/548 (54%), Gaps = 116/548 (21%) Query: 4 HLKIGSRLAFGFCLILLLATAILLIGLWRMAELEASSEYVID---QKVAAMTSAMNMREA 60 +LKI +L F +++L +++GL+ + EL+A ++ D + + +A +++ + Sbjct: 6 NLKIAKKLIVSFAAVIVLT---VILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQAS 62 Query: 61 GSQLALALRKVVTPTDAAEG----KAEDAHLGEILKAYAGFEKQIT-------------- 102 ++ ++ ++VT AE KA + L + K A +E QI+ Sbjct: 63 LPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFSKS 122 Query: 103 ------------GLSADGRGKDLLAATSGESKKLF-PLVEQIRQQVASNNYFDAAQQLKS 149 +SA+G+ ++ A G+S K F ++E + + + N DA + +S Sbjct: 123 FATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVN---DAGSK-RS 178 Query: 150 DFLPAHEKWMASVAALAAFQQEDMKQAHADAKDSYRKAQ---IGMLA-MGVLTLGLGFFF 205 D DM A+ YR A IG+LA + V+ LGL Sbjct: 179 D---------------------DM------AEQVYRSATLWIIGLLAAIVVIALGLAVM- 210 Query: 206 TFVITRSIVNPLKRAGSIAETISRGDLTHDFHDQGRDEAAHLVNALDAMQGNLATTLNEV 265 + R++ PL A ++AE +++GDLT D DE L+++L AM +L + EV Sbjct: 211 ---VARAVSRPLNEAVAVAERVAQGDLTMDIRATSTDETGMLMHSLRAMNDSLQQIVGEV 267 Query: 266 KESAAVIAVASHEIARGNVDLSNRTESQASSLEETASSMEQLTSTVQQNAANAQQANQLV 325 + I AS EIA GN+DLS+RTE QA SLEETAS+ME+LT+TV+QNA NA+QANQL Sbjct: 268 RTGTDTITTASQEIATGNLDLSSRTEEQAGSLEETASAMEELTATVKQNADNARQANQLA 327 Query: 326 LSASDYATKGGRVVGDVVATMGSIKESSGKIVDIIGV----------------------- 362 SASD AT+GG VVG VV TM I ESS +I DII V Sbjct: 328 ASASDIATQGGAVVGQVVQTMEGITESSNRIADIISVIDGIAFQTNILALNAAVEAARAG 387 Query: 363 ----------XEER-------AAAKEIKELISDSVDKVDAGGKLVDEAGATMSEIVASVK 405 E R +AAKEIK+LI DSV+KV AG +LV+ AGATMSE+VASV+ Sbjct: 388 EQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVGAGSQLVERAGATMSEVVASVR 447 Query: 406 HVADIMGEITAASQEQSAGIAEVNNAIAQIDEITQQNAALVEQAAAAAESLQEQSDVLAR 465 V D++ EI+AAS EQS GI E+N AI Q+DE+TQQNAALVE+AAAAA+SLQ+Q+ L++ Sbjct: 448 RVTDVVAEISAASNEQSTGIEEINRAITQMDEVTQQNAALVEEAAAAAQSLQDQAARLSQ 507 Query: 466 AVAVFKLK 473 V+VFKL+ Sbjct: 508 VVSVFKLQ 515 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.125 0.330 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,259,614 Number of extensions: 41854 Number of successful extensions: 597 Number of sequences better than 1.0e-08: 66 Number of HSP's gapped: 338 Number of HSP's successfully gapped: 67 Length of query: 546 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 456 Effective length of database: 1,193,720 Effective search space: 544336320 Effective search space used: 544336320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)